Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ODS entry

There are 3 chains in PDB entry 5ODS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	ARG 574
B	GLN 3	ASN 572
C	GLN 3	LEU 148

There are 81 helices in PDB entry 5ODS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	19	Right-handed 310
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	145	149	Right-handed 310
Helix 4	AA4	A	333	341	Right-handed alpha
Helix 5	AA5	A	344	355	Right-handed alpha
Helix 6	AA6	A	360	374	Right-handed alpha
Helix 7	AA7	A	376	386	Right-handed alpha
Helix 8	AA8	A	394	403	Right-handed alpha
Helix 9	AA9	A	412	425	Right-handed alpha
Helix 10	AB1	A	428	442	Right-handed alpha
Helix 11	AB2	A	445	454	Right-handed alpha
Helix 12	AB3	A	460	469	Right-handed alpha
Helix 13	AB4	A	471	482	Right-handed alpha
Helix 14	AB5	A	484	495	Right-handed alpha
Helix 15	AB6	A	497	509	Right-handed alpha
Helix 16	AB7	A	513	525	Right-handed alpha
Helix 17	AB8	A	525	537	Right-handed alpha
Helix 18	AB9	A	545	556	Right-handed alpha
Helix 19	AC1	A	558	574	Right-handed alpha
Helix 20	AC2	B	16	19	Right-handed 310
Helix 21	AC3	B	21	25	Right-handed 310
Helix 22	AC4	B	145	149	Right-handed 310
Helix 23	AC5	B	333	341	Right-handed alpha
Helix 24	AC6	B	344	355	Right-handed alpha
Helix 25	AC7	B	360	374	Right-handed alpha
Helix 26	AC8	B	376	386	Right-handed alpha
Helix 27	AC9	B	394	403	Right-handed alpha
Helix 28	AD1	B	412	423	Right-handed alpha
Helix 29	AD2	B	428	437	Right-handed alpha
Helix 30	AD3	B	438	442	Right-handed 310
Helix 31	AD4	B	444	455	Right-handed alpha
Helix 32	AD5	B	460	469	Right-handed alpha
Helix 33	AD6	B	471	482	Right-handed alpha
Helix 34	AD7	B	485	496	Right-handed alpha
Helix 35	AD8	B	498	508	Right-handed alpha
Helix 36	AD9	B	514	525	Right-handed alpha
Helix 37	AE1	B	525	537	Right-handed alpha
Helix 38	AE2	B	545	556	Right-handed alpha
Helix 39	AE3	B	558	572	Right-handed alpha
Helix 40	AE4	C	16	19	Right-handed 310
Helix 41	AE5	C	21	25	Right-handed 310
Helix 42	AE6	C	145	149	Right-handed 310
Helix 43	AE7	C	333	341	Right-handed alpha
Helix 44	AE8	C	344	355	Right-handed alpha
Helix 45	AE9	C	360	374	Right-handed alpha
Helix 46	AF1	C	376	386	Right-handed alpha
Helix 47	AF2	C	394	403	Right-handed alpha
Helix 48	AF3	C	413	425	Right-handed alpha
Helix 49	AF4	C	428	442	Right-handed alpha
Helix 50	AF5	C	447	454	Right-handed alpha
Helix 51	AF6	C	461	469	Right-handed alpha
Helix 52	AF7	C	471	482	Right-handed alpha
Helix 53	AF8	C	484	494	Right-handed alpha
Helix 54	AF9	C	498	508	Right-handed alpha
Helix 55	AG1	C	513	525	Right-handed alpha
Helix 56	AG2	C	525	537	Right-handed alpha
Helix 57	AG3	C	545	556	Right-handed alpha
Helix 58	AG4	C	558	571	Right-handed alpha
Helix 59	AG5	D	16	19	Right-handed 310
Helix 60	AG6	D	21	25	Right-handed 310
Helix 61	AG7	D	145	149	Right-handed 310
Helix 62	AG8	D	333	341	Right-handed alpha
Helix 63	AG9	D	344	355	Right-handed alpha
Helix 64	AH1	D	359	374	Right-handed alpha
Helix 65	AH2	D	377	386	Right-handed alpha
Helix 66	AH3	D	394	403	Right-handed alpha
Helix 67	AH4	D	412	425	Right-handed alpha
Helix 68	AH5	D	428	442	Right-handed alpha
Helix 69	AH6	D	445	454	Right-handed alpha
Helix 70	AH7	D	460	469	Right-handed alpha
Helix 71	AH8	D	471	482	Right-handed alpha
Helix 72	AH9	D	485	494	Right-handed alpha
Helix 73	AI1	D	498	509	Right-handed alpha
Helix 74	AI2	D	513	525	Right-handed alpha
Helix 75	AI3	D	525	538	Right-handed alpha
Helix 76	AI4	D	545	556	Right-handed alpha
Helix 77	AI5	D	558	572	Right-handed alpha
Helix 78	AI6	E	551	564	Right-handed alpha
Helix 79	AI7	F	551	564	Right-handed alpha
Helix 80	AI8	G	551	564	Right-handed alpha
Helix 81	AI9	H	551	564	Right-handed alpha

There are 28 sheets in PDB entry 5ODS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	14	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	305	309	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	47	54	anti-parallel
Strand 4	A	62	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	97	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	139	143	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	158	first strand
Strand 2	A	164	172	anti-parallel
Strand 3	A	177	185	anti-parallel
Strand 4	A	190	194	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	204	first strand
Strand 2	A	213	222	anti-parallel
Strand 3	A	225	232	anti-parallel
Strand 4	A	246	249	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	267	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	281	286	anti-parallel
Strand 4	A	292	297	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	14	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	314	318	anti-parallel
Strand 4	B	305	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	47	54	anti-parallel
Strand 4	B	62	64	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	97	103	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	115	first strand
Strand 2	B	118	123	anti-parallel
Strand 3	B	126	131	anti-parallel
Strand 4	B	139	143	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	158	first strand
Strand 2	B	164	172	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	190	195	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	213	222	anti-parallel
Strand 3	B	225	232	anti-parallel
Strand 4	B	246	249	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	267	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	281	286	anti-parallel
Strand 4	B	292	297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	14	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	314	318	anti-parallel
Strand 4	C	305	309	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	37	40	anti-parallel
Strand 3	C	50	54	anti-parallel
Strand 4	C	62	64	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	97	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	126	131	anti-parallel
Strand 4	C	139	143	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	158	first strand
Strand 2	C	164	172	anti-parallel
Strand 3	C	177	185	anti-parallel
Strand 4	C	191	195	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	204	first strand
Strand 2	C	213	222	anti-parallel
Strand 3	C	225	232	anti-parallel
Strand 4	C	246	249	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	267	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	282	286	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	14	first strand
Strand 2	D	323	329	anti-parallel
Strand 3	D	314	318	anti-parallel
Strand 4	D	305	309	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	37	44	anti-parallel
Strand 3	D	47	54	anti-parallel
Strand 4	D	62	64	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	73	first strand
Strand 2	D	79	84	anti-parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	97	102	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	115	first strand
Strand 2	D	118	123	anti-parallel
Strand 3	D	126	131	anti-parallel
Strand 4	D	139	143	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	158	first strand
Strand 2	D	164	172	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	190	194	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	204	first strand
Strand 2	D	213	222	anti-parallel
Strand 3	D	225	232	anti-parallel
Strand 4	D	246	249	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	267	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	282	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ODS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ODS