Analysis of interatomic Contacts of Structural Units in PDB entry:
5OE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OE4 entry

There are 2 chains in PDB entry 5OE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 398
B
 SER 2ALA 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5OE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
32 50Right-handed alpha
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
88 99Right-handed alpha
Helix 5
AA5
A
135 141Right-handed alpha
Helix 6
AA6
A
178 190Right-handed alpha
Helix 7
AA7
A
209 217Right-handed alpha
Helix 8
AA8
A
217 224Right-handed alpha
Helix 9
AA9
A
235 247Right-handed alpha
Helix 10
AB1
A
254 262Right-handed alpha
Helix 11
AB2
A
264 272Right-handed alpha
Helix 12
AB3
A
283 293Right-handed alpha
Helix 13
AB4
A
304 307Right-handed 310
Helix 14
AB5
A
366 371Right-handed alpha
Helix 15
AB6
A
372 377Right-handed 310
Helix 16
AB7
B
6 14Right-handed alpha
Helix 17
AB8
B
32 50Right-handed alpha
Helix 18
AB9
B
63 76Right-handed alpha
Helix 19
AC1
B
88 99Right-handed alpha
Helix 20
AC2
B
135 141Right-handed alpha
Helix 21
AC3
B
178 190Right-handed alpha
Helix 22
AC4
B
209 217Right-handed alpha
Helix 23
AC5
B
217 224Right-handed alpha
Helix 24
AC6
B
235 247Right-handed alpha
Helix 25
AC7
B
254 262Right-handed alpha
Helix 26
AC8
B
264 270Right-handed alpha
Helix 27
AC9
B
283 293Right-handed alpha
Helix 28
AD1
B
304 307Right-handed 310
Helix 29
AD2
B
366 371Right-handed alpha
Helix 30
AD3
B
372 377Right-handed 310
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There are 8 sheets in PDB entry 5OE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
226 229parallel
Strand 4
A
200 203parallel
Strand 5
A
250 253parallel
Strand 6
A
274 277parallel
Strand 7
A
297 302parallel
Strand 8
A
309 312anti-parallel
Strand 9
A
325 326anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
55 59parallel
Strand 3
A
103 106parallel
Strand 4
A
120 123parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 164first strand
Strand 2
A
172 177anti-parallel
Strand 3
A
361 362anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
349 354anti-parallel
Strand 3
A
378 386anti-parallel
Strand 4
A
392 397anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
21 25anti-parallel
Strand 3
B
226 229parallel
Strand 4
B
200 203parallel
Strand 5
B
250 253parallel
Strand 6
B
274 277parallel
Strand 7
B
297 302parallel
Strand 8
B
309 312anti-parallel
Strand 9
B
325 326anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
55 59parallel
Strand 3
B
103 106parallel
Strand 4
B
120 123parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
173 177anti-parallel
Strand 3
B
361 362anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
331 335anti-parallel
Strand 3
B
349 354anti-parallel
Strand 4
B
378 386anti-parallel
Strand 5
B
392 397anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il