Analysis of interatomic Contacts of Structural Units in PDB entry:
5OED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OED entry

There are 6 chains in PDB entry 5OED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23GLN 96
A
 ILE 98ILE 107
A
 GLU 109VAL 162
A
 VAL 165HIS 217
B
 THR 21LEU 64
B
 VAL 66ASN 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5OED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 55Right-handed alpha
Helix 2
AA2
A
63 68Right-handed alpha
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
117 135Right-handed alpha
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
B
37 48Right-handed alpha
Helix 8
AA8
B
83 88Right-handed 310
Helix 9
AA9
B
92 97Right-handed alpha
Helix 10
AB1
B
110 128Right-handed alpha
Helix 11
AB2
B
160 166Right-handed 310
Helix 12
AB3
B
180 195Right-handed alpha
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There are 4 sheets in PDB entry 5OED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
150 159anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
204 208anti-parallel
Strand 5
A
95 97anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
150 159anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
176 179anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
B
57 58anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
73 81anti-parallel
Strand 3
B
22 32parallel
Strand 4
B
101 107parallel
Strand 5
B
138 143parallel
Strand 6
B
169 172parallel
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