Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OEJ entry

There is 1 chain in PDB entry 5OEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
HIS 3LEU 3825
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are159 helices in PDB entry 5OEJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
3 16Right-handed alpha
Helix 2
AA2
B
22 35Right-handed alpha
Helix 3
AA3
B
45 56Right-handed alpha
Helix 4
AA4
B
71 82Right-handed alpha
Helix 5
AA5
B
96 101Right-handed alpha
Helix 6
AA6
B
102 105Right-handed 310
Helix 7
AA7
B
116 124Right-handed 310
Helix 8
AA8
B
137 145Right-handed alpha
Helix 9
AA9
B
189 201Right-handed alpha
Helix 10
AB1
B
221 232Right-handed alpha
Helix 11
AB2
B
241 249Right-handed alpha
Helix 12
AB3
B
265 285Right-handed alpha
Helix 13
AB4
B
294 309Right-handed alpha
Helix 14
AB5
B
314 331Right-handed alpha
Helix 15
AB6
B
335 346Right-handed alpha
Helix 16
AB7
B
359 379Right-handed alpha
Helix 17
AB8
B
385 397Right-handed alpha
Helix 18
AB9
B
405 423Right-handed alpha
Helix 19
AC1
B
432 463Right-handed alpha
Helix 20
AC2
B
558 581Right-handed alpha
Helix 21
AC3
B
654 668Right-handed alpha
Helix 22
AC4
B
673 690Right-handed alpha
Helix 23
AC5
B
698 707Right-handed alpha
Helix 24
AC6
B
713 726Right-handed alpha
Helix 25
AC7
B
735 749Right-handed alpha
Helix 26
AC8
B
760 777Right-handed alpha
Helix 27
AC9
B
784 795Right-handed alpha
Helix 28
AD1
B
803 819Right-handed alpha
Helix 29
AD2
B
826 842Right-handed alpha
Helix 30
AD3
B
849 863Right-handed alpha
Helix 31
AD4
B
869 883Right-handed alpha
Helix 32
AD5
B
888 907Right-handed alpha
Helix 33
AD6
B
920 929Right-handed alpha
Helix 34
AD7
B
973 982Right-handed alpha
Helix 35
AD8
B
992 1007Right-handed alpha
Helix 36
AD9
B
1015 1025Right-handed alpha
Helix 37
AE1
B
1054 1067Right-handed alpha
Helix 38
AE2
B
1073 1094Right-handed alpha
Helix 39
AE3
B
1120 1133Right-handed alpha
Helix 40
AE4
B
1138 1155Right-handed alpha
Helix 41
AE5
B
1170 1177Right-handed alpha
Helix 42
AE6
B
1184 1202Right-handed alpha
Helix 43
AE7
B
1212 1221Right-handed alpha
Helix 44
AE8
B
1235 1251Right-handed alpha
Helix 45
AE9
B
1259 1275Right-handed alpha
Helix 46
AF1
B
1282 1296Right-handed alpha
Helix 47
AF2
B
1302 1315Right-handed alpha
Helix 48
AF3
B
1328 1340Right-handed alpha
Helix 49
AF4
B
1353 1364Right-handed alpha
Helix 50
AF5
B
1385 1401Right-handed alpha
Helix 51
AF6
B
1414 1428Right-handed alpha
Helix 52
AF7
B
1435 1446Right-handed alpha
Helix 53
AF8
B
1455 1471Right-handed alpha
Helix 54
AF9
B
1476 1493Right-handed alpha
Helix 55
AG1
B
1498 1516Right-handed alpha
Helix 56
AG2
B
1528 1540Right-handed alpha
Helix 57
AG3
B
1547 1563Right-handed alpha
Helix 58
AG4
B
1572 1580Right-handed alpha
Helix 59
AG5
B
1585 1595Right-handed alpha
Helix 60
AG6
B
1600 1610Right-handed alpha
Helix 61
AG7
B
1615 1631Right-handed alpha
Helix 62
AG8
B
1642 1647Right-handed alpha
Helix 63
AG9
B
1648 1654Right-handed alpha
Helix 64
AH1
B
1667 1675Right-handed alpha
Helix 65
AH2
B
1679 1688Right-handed alpha
Helix 66
AH3
B
1695 1712Right-handed alpha
Helix 67
AH4
B
1717 1732Right-handed alpha
Helix 68
AH5
B
1740 1745Right-handed alpha
Helix 69
AH6
B
1751 1767Right-handed alpha
Helix 70
AH7
B
1774 1795Right-handed alpha
Helix 71
AH8
B
1810 1821Right-handed alpha
Helix 72
AH9
B
1839 1848Right-handed alpha
Helix 73
AI1
B
1853 1871Right-handed alpha
Helix 74
AI2
B
1876 1893Right-handed alpha
Helix 75
AI3
B
1898 1912Right-handed alpha
Helix 76
AI4
B
1917 1929Right-handed alpha
Helix 77
AI5
B
1930 1933Right-handed 310
Helix 78
AI6
B
1975 1991Right-handed alpha
Helix 79
AI7
B
2004 2020Right-handed alpha
Helix 80
AI8
B
2086 2099Right-handed alpha
Helix 81
AI9
B
2109 2123Right-handed alpha
Helix 82
AJ1
B
2132 2143Right-handed alpha
Helix 83
AJ2
B
2153 2166Right-handed alpha
Helix 84
AJ3
B
2173 2189Right-handed alpha
Helix 85
AJ4
B
2195 2213Right-handed alpha
Helix 86
AJ5
B
2227 2241Right-handed alpha
Helix 87
AJ6
B
2247 2260Right-handed alpha
Helix 88
AJ7
B
2264 2285Right-handed alpha
Helix 89
AJ8
B
2293 2299Right-handed alpha
Helix 90
AJ9
B
2308 2322Right-handed alpha
Helix 91
AK1
B
2327 2344Right-handed alpha
Helix 92
AK2
B
2349 2366Right-handed alpha
Helix 93
AK3
B
2371 2386Right-handed alpha
Helix 94
AK4
B
2391 2405Right-handed alpha
Helix 95
AK5
B
2410 2425Right-handed alpha
Helix 96
AK6
B
2430 2445Right-handed alpha
Helix 97
AK7
B
2450 2465Right-handed alpha
Helix 98
AK8
B
2470 2481Right-handed alpha
Helix 99
AK9
B
2496 2511Right-handed alpha
Helix 100
AL1
B
2522 2534Right-handed alpha
Helix 101
AL2
B
2541 2550Right-handed alpha
Helix 102
AL3
B
2556 2566Right-handed alpha
Helix 103
AL4
B
2577 2594Right-handed alpha
Helix 104
AL5
B
2603 2614Right-handed alpha
Helix 105
AL6
B
2623 2631Right-handed alpha
Helix 106
AL7
B
2637 2648Right-handed alpha
Helix 107
AL8
B
2657 2669Right-handed alpha
Helix 108
AL9
B
2675 2684Right-handed alpha
Helix 109
AM1
B
2690 2697Right-handed alpha
Helix 110
AM2
B
2702 2717Right-handed alpha
Helix 111
AM3
B
2723 2738Right-handed alpha
Helix 112
AM4
B
2739 2741Right-handed 310
Helix 113
AM5
B
2742 2750Right-handed alpha
Helix 114
AM6
B
2756 2765Right-handed alpha
Helix 115
AM7
B
2771 2782Right-handed alpha
Helix 116
AM8
B
2791 2803Right-handed alpha
Helix 117
AM9
B
2810 2819Right-handed alpha
Helix 118
AN1
B
2820 2825Right-handed alpha
Helix 119
AN2
B
2826 2833Right-handed 310
Helix 120
AN3
B
2839 2864Right-handed alpha
Helix 121
AN4
B
2876 2890Right-handed alpha
Helix 122
AN5
B
2897 2906Right-handed alpha
Helix 123
AN6
B
2908 2916Right-handed alpha
Helix 124
AN7
B
2937 2946Right-handed alpha
Helix 125
AN8
B
2947 2957Right-handed alpha
Helix 126
AN9
B
2965 2970Right-handed alpha
Helix 127
AO1
B
2984 2992Right-handed alpha
Helix 128
AO2
B
3000 3008Right-handed alpha
Helix 129
AO3
B
3018 3032Right-handed alpha
Helix 130
AO4
B
3040 3050Right-handed alpha
Helix 131
AO5
B
3056 3072Right-handed alpha
Helix 132
AO6
B
3076 3088Right-handed alpha
Helix 133
AO7
B
3089 3094Right-handed 310
Helix 134
AO8
B
3097 3111Right-handed alpha
Helix 135
AO9
B
3119 3129Right-handed alpha
Helix 136
AP1
B
3132 3136Right-handed 310
Helix 137
AP2
B
3139 3144Right-handed 310
Helix 138
AP3
B
3154 3165Right-handed alpha
Helix 139
AP4
B
3169 3181Right-handed alpha
Helix 140
AP5
B
3277 3295Right-handed alpha
Helix 141
AP6
B
3301 3314Right-handed alpha
Helix 142
AP7
B
3323 3339Right-handed alpha
Helix 143
AP8
B
3354 3361Right-handed alpha
Helix 144
AP9
B
3368 3380Right-handed alpha
Helix 145
AQ1
B
3384 3401Right-handed alpha
Helix 146
AQ2
B
3423 3428Right-handed alpha
Helix 147
AQ3
B
3491 3508Right-handed alpha
Helix 148
AQ4
B
3513 3518Right-handed alpha
Helix 149
AQ5
B
3544 3554Right-handed alpha
Helix 150
AQ6
B
3563 3574Right-handed alpha
Helix 151
AQ7
B
3588 3595Right-handed alpha
Helix 152
AQ8
B
3601 3613Right-handed alpha
Helix 153
AQ9
B
3615 3638Right-handed alpha
Helix 154
AR1
B
3720 3731Right-handed alpha
Helix 155
AR2
B
3740 3749Right-handed alpha
Helix 156
AR3
B
3756 3762Right-handed alpha
Helix 157
AR4
B
3771 3784Right-handed alpha
Helix 158
AR5
B
3798 3807Right-handed alpha
Helix 159
AR6
B
3811 3816Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5OEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3409 3411first strand
Strand 2
B
3455 3457anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3470 3471first strand
Strand 2
B
3479 3480anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il