Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OEV entry

There are 4 chains in PDB entry 5OEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 8	PHE 487
B	TYR 8	PHE 487
C	TYR 8	PHE 487
D	TYR 8	HIS 20

There are 77 helices in PDB entry 5OEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed alpha
Helix 2	AA2	A	15	33	Right-handed alpha
Helix 3	AA3	A	63	72	Right-handed alpha
Helix 4	AA4	A	72	86	Right-handed alpha
Helix 5	AA5	A	86	95	Right-handed alpha
Helix 6	AA6	A	96	100	Right-handed 310
Helix 7	AA7	A	101	117	Right-handed alpha
Helix 8	AA8	A	161	178	Right-handed alpha
Helix 9	AA9	A	181	185	Right-handed 310
Helix 10	AB1	A	189	206	Right-handed alpha
Helix 11	AB2	A	222	237	Right-handed alpha
Helix 12	AB3	A	247	254	Right-handed alpha
Helix 13	AB4	A	285	298	Right-handed alpha
Helix 14	AB5	A	305	311	Right-handed alpha
Helix 15	AB6	A	313	320	Right-handed alpha
Helix 16	AB7	A	324	330	Right-handed alpha
Helix 17	AB8	A	332	334	Right-handed 310
Helix 18	AB9	A	335	344	Right-handed alpha
Helix 19	AC1	A	356	369	Right-handed alpha
Helix 20	AC2	A	387	398	Right-handed alpha
Helix 21	AC3	A	402	405	Right-handed 310
Helix 22	AC4	B	9	13	Right-handed alpha
Helix 23	AC5	B	15	33	Right-handed alpha
Helix 24	AC6	B	63	72	Right-handed alpha
Helix 25	AC7	B	72	86	Right-handed alpha
Helix 26	AC8	B	86	95	Right-handed alpha
Helix 27	AC9	B	96	100	Right-handed 310
Helix 28	AD1	B	101	117	Right-handed alpha
Helix 29	AD2	B	160	178	Right-handed alpha
Helix 30	AD3	B	181	185	Right-handed 310
Helix 31	AD4	B	189	206	Right-handed alpha
Helix 32	AD5	B	222	237	Right-handed alpha
Helix 33	AD6	B	247	254	Right-handed alpha
Helix 34	AD7	B	285	298	Right-handed alpha
Helix 35	AD8	B	305	311	Right-handed alpha
Helix 36	AD9	B	313	320	Right-handed alpha
Helix 37	AE1	B	324	330	Right-handed alpha
Helix 38	AE2	B	332	334	Right-handed 310
Helix 39	AE3	B	335	344	Right-handed alpha
Helix 40	AE4	C	9	13	Right-handed alpha
Helix 41	AE5	C	15	33	Right-handed alpha
Helix 42	AE6	C	63	72	Right-handed alpha
Helix 43	AE7	C	72	86	Right-handed alpha
Helix 44	AE8	C	86	95	Right-handed alpha
Helix 45	AE9	C	96	100	Right-handed 310
Helix 46	AF1	C	101	117	Right-handed alpha
Helix 47	AF2	C	160	178	Right-handed alpha
Helix 48	AF3	C	181	185	Right-handed 310
Helix 49	AF4	C	189	206	Right-handed alpha
Helix 50	AF5	C	222	237	Right-handed alpha
Helix 51	AF6	C	247	254	Right-handed alpha
Helix 52	AF7	C	285	298	Right-handed alpha
Helix 53	AF8	C	305	311	Right-handed alpha
Helix 54	AF9	C	313	320	Right-handed alpha
Helix 55	AG1	C	324	330	Right-handed alpha
Helix 56	AG2	C	332	334	Right-handed 310
Helix 57	AG3	C	335	344	Right-handed alpha
Helix 58	AG4	D	9	14	Right-handed alpha
Helix 59	AG5	D	15	33	Right-handed alpha
Helix 60	AG6	D	63	72	Right-handed alpha
Helix 61	AG7	D	72	86	Right-handed alpha
Helix 62	AG8	D	86	95	Right-handed alpha
Helix 63	AG9	D	96	100	Right-handed 310
Helix 64	AH1	D	101	117	Right-handed alpha
Helix 65	AH2	D	161	178	Right-handed alpha
Helix 66	AH3	D	181	185	Right-handed 310
Helix 67	AH4	D	189	206	Right-handed alpha
Helix 68	AH5	D	222	237	Right-handed alpha
Helix 69	AH6	D	247	254	Right-handed alpha
Helix 70	AH7	D	285	298	Right-handed alpha
Helix 71	AH8	D	305	311	Right-handed alpha
Helix 72	AH9	D	313	320	Right-handed alpha
Helix 73	AI1	D	324	330	Right-handed alpha
Helix 74	AI2	D	332	334	Right-handed 310
Helix 75	AI3	D	335	344	Right-handed alpha
Helix 76	AI4	D	356	369	Right-handed alpha
Helix 77	AI5	D	387	397	Right-handed alpha

There are 20 sheets in PDB entry 5OEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	C	48	51	anti-parallel
Strand 4	C	36	38	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	154	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	430	446	anti-parallel
Strand 4	A	452	466	anti-parallel
Strand 5	A	480	482	anti-parallel
Strand 6	A	54	55	parallel
Strand 7	A	417	422	anti-parallel
Strand 8	A	430	446	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	484	487	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	211	215	parallel
Strand 3	A	268	275	parallel
Strand 4	A	263	265	anti-parallel
Strand 5	A	255	257	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	211	215	parallel
Strand 3	A	268	275	parallel
Strand 4	A	301	303	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	407	410	anti-parallel
Strand 3	A	373	376	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	D	48	51	anti-parallel
Strand 4	D	36	38	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	154	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	430	446	anti-parallel
Strand 4	B	452	466	anti-parallel
Strand 5	B	480	482	anti-parallel
Strand 6	B	54	55	parallel
Strand 7	B	417	422	anti-parallel
Strand 8	B	430	446	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	484	487	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	211	215	parallel
Strand 3	B	268	275	parallel
Strand 4	B	263	265	anti-parallel
Strand 5	B	255	257	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	211	215	parallel
Strand 3	B	268	275	parallel
Strand 4	B	301	303	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	154	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	430	446	anti-parallel
Strand 4	C	452	466	anti-parallel
Strand 5	C	480	482	anti-parallel
Strand 6	C	54	55	parallel
Strand 7	C	417	422	anti-parallel
Strand 8	C	430	446	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	484	487	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	211	215	parallel
Strand 3	C	268	275	parallel
Strand 4	C	263	265	anti-parallel
Strand 5	C	255	257	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	211	215	parallel
Strand 3	C	268	275	parallel
Strand 4	C	301	303	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	154	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	430	446	anti-parallel
Strand 4	D	452	466	anti-parallel
Strand 5	D	480	482	anti-parallel
Strand 6	D	54	55	parallel
Strand 7	D	417	422	anti-parallel
Strand 8	D	430	446	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	484	487	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	211	215	parallel
Strand 3	D	268	275	parallel
Strand 4	D	263	265	anti-parallel
Strand 5	D	255	257	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	211	215	parallel
Strand 3	D	268	275	parallel
Strand 4	D	301	303	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	351	first strand
Strand 2	D	407	410	anti-parallel
Strand 3	D	373	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEV