Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OEX entry

There are 4 chains in PDB entry 5OEX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 82	THR 548
B	LYS 82	THR 548
C	LYS 82	THR 548
D	LYS 82	THR 548

There are 45 helices in PDB entry 5OEX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	92	Right-handed alpha
Helix 2	AA2	A	103	105	Right-handed 310
Helix 3	AA3	A	125	128	Right-handed 310
Helix 4	AA4	A	158	163	Right-handed 310
Helix 5	AA5	A	195	200	Right-handed alpha
Helix 6	AA6	A	292	299	Right-handed alpha
Helix 7	AA7	A	306	310	Right-handed 310
Helix 8	AA8	A	413	417	Right-handed 310
Helix 9	AA9	A	425	429	Right-handed 310
Helix 10	AB1	A	500	502	Right-handed 310
Helix 11	AB2	A	538	543	Right-handed 310
Helix 12	AB3	B	85	92	Right-handed alpha
Helix 13	AB4	B	103	105	Right-handed 310
Helix 14	AB5	B	125	128	Right-handed 310
Helix 15	AB6	B	158	163	Right-handed 310
Helix 16	AB7	B	195	200	Right-handed alpha
Helix 17	AB8	B	292	299	Right-handed alpha
Helix 18	AB9	B	306	310	Right-handed 310
Helix 19	AC1	B	413	417	Right-handed 310
Helix 20	AC2	B	500	502	Right-handed 310
Helix 21	AC3	B	538	543	Right-handed 310
Helix 22	AC4	C	85	94	Right-handed alpha
Helix 23	AC5	C	103	105	Right-handed 310
Helix 24	AC6	C	125	128	Right-handed 310
Helix 25	AC7	C	158	163	Right-handed 310
Helix 26	AC8	C	195	200	Right-handed alpha
Helix 27	AC9	C	270	274	Right-handed 310
Helix 28	AD1	C	292	299	Right-handed alpha
Helix 29	AD2	C	306	310	Right-handed 310
Helix 30	AD3	C	413	417	Right-handed 310
Helix 31	AD4	C	425	429	Right-handed 310
Helix 32	AD5	C	500	502	Right-handed 310
Helix 33	AD6	C	536	541	Right-handed alpha
Helix 34	AD7	D	86	92	Right-handed alpha
Helix 35	AD8	D	103	105	Right-handed 310
Helix 36	AD9	D	125	128	Right-handed 310
Helix 37	AE1	D	158	163	Right-handed 310
Helix 38	AE2	D	195	200	Right-handed alpha
Helix 39	AE3	D	270	274	Right-handed 310
Helix 40	AE4	D	292	299	Right-handed alpha
Helix 41	AE5	D	306	310	Right-handed 310
Helix 42	AE6	D	413	417	Right-handed 310
Helix 43	AE7	D	425	429	Right-handed 310
Helix 44	AE8	D	500	502	Right-handed 310
Helix 45	AE9	D	538	543	Right-handed 310

There are 28 sheets in PDB entry 5OEX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	97	101	anti-parallel
Strand 4	A	531	532	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	139	first strand
Strand 2	A	149	156	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	189	194	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	215	220	anti-parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	236	246	anti-parallel
Strand 5	A	259	265	anti-parallel
Strand 6	A	368	373	anti-parallel
Strand 7	A	361	365	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	318	first strand
Strand 2	A	324	329	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	344	350	anti-parallel
Strand 5	A	358	359	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	385	first strand
Strand 2	A	391	396	anti-parallel
Strand 3	A	402	407	anti-parallel
Strand 4	A	418	423	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	440	first strand
Strand 2	A	446	451	anti-parallel
Strand 3	A	459	465	anti-parallel
Strand 4	A	470	478	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	486	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	A	505	511	anti-parallel
Strand 4	A	516	522	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	123	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	97	101	anti-parallel
Strand 4	B	531	532	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	139	first strand
Strand 2	B	149	156	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	189	194	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	215	220	anti-parallel
Strand 3	B	225	230	anti-parallel
Strand 4	B	236	246	anti-parallel
Strand 5	B	259	265	anti-parallel
Strand 6	B	368	373	anti-parallel
Strand 7	B	361	365	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	318	first strand
Strand 2	B	324	329	anti-parallel
Strand 3	B	334	339	anti-parallel
Strand 4	B	344	350	anti-parallel
Strand 5	B	358	359	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	385	first strand
Strand 2	B	391	396	anti-parallel
Strand 3	B	402	407	anti-parallel
Strand 4	B	418	423	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	440	first strand
Strand 2	B	446	451	anti-parallel
Strand 3	B	459	465	anti-parallel
Strand 4	B	470	478	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	486	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	505	511	anti-parallel
Strand 4	B	516	522	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	123	first strand
Strand 2	C	107	112	anti-parallel
Strand 3	C	97	101	anti-parallel
Strand 4	C	531	532	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	139	first strand
Strand 2	C	149	156	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	189	194	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	215	220	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	236	246	anti-parallel
Strand 5	C	259	265	anti-parallel
Strand 6	C	368	373	anti-parallel
Strand 7	C	362	365	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	318	first strand
Strand 2	C	324	329	anti-parallel
Strand 3	C	334	339	anti-parallel
Strand 4	C	344	350	anti-parallel
Strand 5	C	358	359	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	385	first strand
Strand 2	C	391	396	anti-parallel
Strand 3	C	402	407	anti-parallel
Strand 4	C	418	423	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	440	first strand
Strand 2	C	446	451	anti-parallel
Strand 3	C	459	465	anti-parallel
Strand 4	C	470	478	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	486	first strand
Strand 2	C	492	498	anti-parallel
Strand 3	C	505	511	anti-parallel
Strand 4	C	516	522	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	123	first strand
Strand 2	D	107	112	anti-parallel
Strand 3	D	97	101	anti-parallel
Strand 4	D	531	532	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	139	first strand
Strand 2	D	149	156	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	189	194	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	215	220	anti-parallel
Strand 3	D	225	230	anti-parallel
Strand 4	D	236	246	anti-parallel
Strand 5	D	259	266	anti-parallel
Strand 6	D	368	373	anti-parallel
Strand 7	D	361	365	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	318	first strand
Strand 2	D	324	329	anti-parallel
Strand 3	D	334	339	anti-parallel
Strand 4	D	344	350	anti-parallel
Strand 5	D	358	359	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	385	first strand
Strand 2	D	391	396	anti-parallel
Strand 3	D	402	407	anti-parallel
Strand 4	D	418	423	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	440	first strand
Strand 2	D	446	451	anti-parallel
Strand 3	D	459	465	anti-parallel
Strand 4	D	470	478	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	486	first strand
Strand 2	D	492	498	anti-parallel
Strand 3	D	505	511	anti-parallel
Strand 4	D	516	522	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OEX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEX