Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OEY entry

There are 4 chains in PDB entry 5OEY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	ASP 336
B	THR 8	ARG 337
C	PRO 7	ARG 337
D	PRO 7	ARG 337

There are 49 helices in PDB entry 5OEY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	20	Right-handed alpha
Helix 2	AA2	A	26	49	Right-handed alpha
Helix 3	AA3	A	71	88	Right-handed alpha
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	122	129	Right-handed 310
Helix 6	AA6	A	149	159	Right-handed alpha
Helix 7	AA7	A	160	165	Right-handed 310
Helix 8	AA8	A	218	225	Right-handed 310
Helix 9	AA9	A	226	239	Right-handed alpha
Helix 10	AB1	A	251	263	Right-handed alpha
Helix 11	AB2	A	284	295	Right-handed alpha
Helix 12	AB3	A	307	309	Right-handed 310
Helix 13	AB4	A	324	336	Right-handed alpha
Helix 14	AB5	B	11	20	Right-handed alpha
Helix 15	AB6	B	26	49	Right-handed alpha
Helix 16	AB7	B	71	88	Right-handed alpha
Helix 17	AB8	B	122	129	Right-handed 310
Helix 18	AB9	B	149	159	Right-handed alpha
Helix 19	AC1	B	160	165	Right-handed 310
Helix 20	AC2	B	218	225	Right-handed 310
Helix 21	AC3	B	226	239	Right-handed alpha
Helix 22	AC4	B	251	263	Right-handed alpha
Helix 23	AC5	B	284	295	Right-handed alpha
Helix 24	AC6	B	307	309	Right-handed 310
Helix 25	AC7	B	324	336	Right-handed alpha
Helix 26	AC8	C	11	20	Right-handed alpha
Helix 27	AC9	C	26	49	Right-handed alpha
Helix 28	AD1	C	71	88	Right-handed alpha
Helix 29	AD2	C	122	129	Right-handed 310
Helix 30	AD3	C	149	159	Right-handed alpha
Helix 31	AD4	C	160	165	Right-handed 310
Helix 32	AD5	C	218	225	Right-handed 310
Helix 33	AD6	C	226	239	Right-handed alpha
Helix 34	AD7	C	251	263	Right-handed alpha
Helix 35	AD8	C	284	295	Right-handed alpha
Helix 36	AD9	C	307	309	Right-handed 310
Helix 37	AE1	C	324	336	Right-handed alpha
Helix 38	AE2	D	11	20	Right-handed alpha
Helix 39	AE3	D	27	49	Right-handed alpha
Helix 40	AE4	D	72	88	Right-handed alpha
Helix 41	AE5	D	106	110	Right-handed 310
Helix 42	AE6	D	122	129	Right-handed 310
Helix 43	AE7	D	161	165	Right-handed 310
Helix 44	AE8	D	218	225	Right-handed 310
Helix 45	AE9	D	226	239	Right-handed alpha
Helix 46	AF1	D	251	263	Right-handed alpha
Helix 47	AF2	D	284	295	Right-handed alpha
Helix 48	AF3	D	307	309	Right-handed 310
Helix 49	AF4	D	324	336	Right-handed alpha

There are 12 sheets in PDB entry 5OEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	113	121	parallel
Strand 4	A	132	140	anti-parallel
Strand 5	A	167	173	anti-parallel
Strand 6	A	177	182	anti-parallel
Strand 7	A	187	192	anti-parallel
Strand 8	A	199	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	214	216	parallel
Strand 3	A	265	268	parallel
Strand 4	A	320	323	anti-parallel
Strand 5	A	298	301	anti-parallel
Strand 6	A	304	305	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	317	318	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	113	121	parallel
Strand 4	B	132	140	anti-parallel
Strand 5	B	167	173	anti-parallel
Strand 6	B	177	182	anti-parallel
Strand 7	B	187	192	anti-parallel
Strand 8	B	199	203	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	214	216	parallel
Strand 3	B	265	268	parallel
Strand 4	B	320	323	anti-parallel
Strand 5	B	298	301	anti-parallel
Strand 6	B	304	305	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	317	318	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	113	121	parallel
Strand 4	C	132	140	anti-parallel
Strand 5	C	167	173	anti-parallel
Strand 6	C	177	182	anti-parallel
Strand 7	C	187	192	anti-parallel
Strand 8	C	199	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	214	216	parallel
Strand 3	C	265	268	parallel
Strand 4	C	320	323	anti-parallel
Strand 5	C	298	301	anti-parallel
Strand 6	C	304	305	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	317	318	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	113	121	parallel
Strand 4	D	132	140	anti-parallel
Strand 5	D	167	173	anti-parallel
Strand 6	D	177	182	anti-parallel
Strand 7	D	187	192	anti-parallel
Strand 8	D	199	203	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	214	216	parallel
Strand 3	D	265	268	parallel
Strand 4	D	320	323	anti-parallel
Strand 5	D	298	301	anti-parallel
Strand 6	D	304	305	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	280	first strand
Strand 2	D	317	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OEY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OEY