Analysis of interatomic Contacts of Structural Units in PDB entry:
5OF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OF1 entry

There are 2 chains in PDB entry 5OF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 30LYS 239
B
 ASN 30ILE 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5OF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 107Right-handed alpha
Helix 2
AA2
A
135 145Right-handed alpha
Helix 3
AA3
A
146 155Right-handed alpha
Helix 4
AA4
A
158 162Right-handed 310
Helix 5
AA5
A
179 181Right-handed 310
Helix 6
AA6
A
212 218Right-handed 310
Helix 7
AA7
B
101 107Right-handed alpha
Helix 8
AA8
B
135 145Right-handed alpha
Helix 9
AA9
B
146 155Right-handed alpha
Helix 10
AB1
B
158 162Right-handed 310
Helix 11
AB2
B
179 181Right-handed 310
Helix 12
AB3
B
212 218Right-handed 310
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There are 6 sheets in PDB entry 5OF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
65 73parallel
Strand 3
A
194 200anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
A
127 134anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
221 231anti-parallel
Strand 3
A
82 93anti-parallel
Strand 4
A
168 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
65 73parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
109 115anti-parallel
Strand 5
B
127 134anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
221 231anti-parallel
Strand 3
B
82 93anti-parallel
Strand 4
B
168 169anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il