Analysis of interatomic Contacts of Structural Units in PDB entry:
5OFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OFK entry

There is 1 chain in PDB entry 5OFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -2SER 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5OFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
23 28Right-handed 310
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
50 54Right-handed alpha
Helix 5
AA5
A
67 80Right-handed alpha
Helix 6
AA6
A
96 101Right-handed 310
Helix 7
AA7
A
109 128Right-handed alpha
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
161 175Right-handed alpha
Helix 10
AB1
A
189 206Right-handed alpha
Helix 11
AB2
A
225 237Right-handed alpha
Helix 12
AB3
A
266 285Right-handed alpha
Helix 13
AB4
A
286 288Right-handed 310
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
305 311Right-handed alpha
Helix 16
AB7
A
326 336Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5OFK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
243 252parallel
Strand 3
A
291 296parallel
Strand 4
A
17 22parallel
Strand 5
A
42 45parallel
Strand 6
A
83 91parallel
Strand 7
A
134 139parallel
Strand 8
A
179 184parallel
Strand 9
A
212 215parallel
Strand 10
A
243 252parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
62 65anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il