Analysis of interatomic Contacts of Structural Units in PDB entry:
5OFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OFN entry

There are 3 chains in PDB entry 5OFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11VAL 329
B
 LEU 3GLU 208
C
 ASP 56SER 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5OFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
32 34Right-handed 310
Helix 3
AA3
A
56 67Right-handed alpha
Helix 4
AA4
A
88 91Right-handed 310
Helix 5
AA5
A
142 163Right-handed alpha
Helix 6
AA6
A
186 191Right-handed 310
Helix 7
AA7
A
192 205Right-handed alpha
Helix 8
AA8
A
219 226Right-handed alpha
Helix 9
AA9
A
235 241Right-handed alpha
Helix 10
AB1
A
265 269Right-handed 310
Helix 11
AB2
A
272 276Right-handed 310
Helix 12
AB3
A
311 320Right-handed alpha
Helix 13
AB4
B
13 18Right-handed alpha
Helix 14
AB5
B
19 22Right-handed 310
Helix 15
AB6
B
26 34Right-handed alpha
Helix 16
AB7
B
36 51Right-handed alpha
Helix 17
AB8
B
56 60Right-handed 310
Helix 18
AB9
B
62 78Right-handed alpha
Helix 19
AC1
B
79 99Right-handed alpha
Helix 20
AC2
B
102 113Right-handed alpha
Helix 21
AC3
B
142 149Right-handed alpha
Helix 22
AC4
B
150 152Right-handed 310
Helix 23
AC5
B
153 161Right-handed 310
Helix 24
AC6
B
171 190Right-handed alpha
Helix 25
AC7
B
191 195Right-handed 310
Helix 26
AC8
B
200 207Right-handed alpha
Helix 27
AC9
C
57 67Right-handed alpha
Helix 28
AD1
C
71 79Right-handed alpha
Helix 29
AD2
C
79 87Right-handed alpha
Helix 30
AD3
C
93 104Right-handed alpha
Helix 31
AD4
C
112 127Right-handed alpha
Helix 32
AD5
C
132 139Right-handed alpha
Helix 33
AD6
C
140 152Right-handed alpha
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There are 7 sheets in PDB entry 5OFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
70 80anti-parallel
Strand 4
A
93 96anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
70 80anti-parallel
Strand 4
A
245 247anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
178 182anti-parallel
Strand 3
A
169 172anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
136 139anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
281 286anti-parallel
Strand 3
A
323 328anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 294first strand
Strand 2
A
297 301anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 126first strand
Strand 2
B
133 141anti-parallel
Strand 3
B
167 170anti-parallel
Strand 4
B
163 164anti-parallel
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