Analysis of interatomic Contacts of Structural Units in PDB entry:
5OFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OFP entry

There is 1 chain in PDB entry 5OFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9THR 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5OFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
18 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
63 112Right-handed alpha
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
121 129Right-handed alpha
Helix 7
AA7
A
129 144Right-handed alpha
Helix 8
AA8
A
144 164Right-handed alpha
Helix 9
AA9
A
166 207Right-handed alpha
Helix 10
AB1
A
208 215Right-handed alpha
Helix 11
AB2
A
215 223Right-handed alpha
Helix 12
AB3
A
224 278Right-handed alpha
Helix 13
AB4
A
282 295Right-handed alpha
Helix 14
AB5
A
296 319Right-handed alpha
Helix 15
AB6
A
383 393Right-handed alpha
Helix 16
AB7
A
413 420Right-handed alpha
Helix 17
AB8
A
434 440Right-handed alpha
Helix 18
AB9
A
447 458Right-handed alpha
Helix 19
AC1
A
475 479Right-handed 310
Helix 20
AC2
A
482 497Right-handed alpha
Helix 21
AC3
A
512 521Right-handed alpha
Helix 22
AC4
A
521 527Right-handed alpha
Helix 23
AC5
A
538 544Right-handed alpha
Helix 24
AC6
A
561 569Right-handed alpha
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There are 3 sheets in PDB entry 5OFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
345 352anti-parallel
Strand 3
A
398 403anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
501 505parallel
Strand 3
A
531 535parallel
Strand 4
A
373 377parallel
Strand 5
A
547 552parallel
Strand 6
A
555 560anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
466 467anti-parallel
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