Analysis of interatomic Contacts of Structural Units in PDB entry:
5OFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OFQ entry

There are 4 chains in PDB entry 5OFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 16	ASN 401
B	ILE 16	ASN 401
C	ILE 16	ASN 401
D	LEU 15	ASN 401

There are 74 helices in PDB entry 5OFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	29	Right-handed alpha
Helix 2	AA2	A	30	41	Right-handed alpha
Helix 3	AA3	A	56	66	Right-handed alpha
Helix 4	AA4	A	81	86	Right-handed 310
Helix 5	AA5	A	89	100	Right-handed alpha
Helix 6	AA6	A	103	109	Right-handed alpha
Helix 7	AA7	A	110	124	Right-handed alpha
Helix 8	AA8	A	133	137	Right-handed alpha
Helix 9	AA9	A	139	151	Right-handed alpha
Helix 10	AB1	A	153	155	Right-handed 310
Helix 11	AB2	A	156	168	Right-handed alpha
Helix 12	AB3	A	175	207	Right-handed alpha
Helix 13	AB4	A	211	219	Right-handed alpha
Helix 14	AB5	A	227	260	Right-handed alpha
Helix 15	AB6	A	260	270	Right-handed alpha
Helix 16	AB7	A	273	285	Right-handed alpha
Helix 17	AB8	A	316	320	Right-handed alpha
Helix 18	AB9	A	353	372	Right-handed alpha
Helix 19	AC1	B	23	29	Right-handed alpha
Helix 20	AC2	B	30	41	Right-handed alpha
Helix 21	AC3	B	56	66	Right-handed alpha
Helix 22	AC4	B	81	86	Right-handed 310
Helix 23	AC5	B	89	99	Right-handed alpha
Helix 24	AC6	B	100	102	Right-handed 310
Helix 25	AC7	B	103	109	Right-handed alpha
Helix 26	AC8	B	110	124	Right-handed alpha
Helix 27	AC9	B	133	137	Right-handed alpha
Helix 28	AD1	B	139	151	Right-handed alpha
Helix 29	AD2	B	153	155	Right-handed 310
Helix 30	AD3	B	156	168	Right-handed alpha
Helix 31	AD4	B	175	207	Right-handed alpha
Helix 32	AD5	B	211	219	Right-handed alpha
Helix 33	AD6	B	227	260	Right-handed alpha
Helix 34	AD7	B	260	270	Right-handed alpha
Helix 35	AD8	B	273	285	Right-handed alpha
Helix 36	AD9	B	316	320	Right-handed alpha
Helix 37	AE1	B	353	372	Right-handed alpha
Helix 38	AE2	C	23	28	Right-handed alpha
Helix 39	AE3	C	30	41	Right-handed alpha
Helix 40	AE4	C	56	66	Right-handed alpha
Helix 41	AE5	C	81	86	Right-handed 310
Helix 42	AE6	C	89	99	Right-handed alpha
Helix 43	AE7	C	100	102	Right-handed 310
Helix 44	AE8	C	103	108	Right-handed alpha
Helix 45	AE9	C	109	124	Right-handed alpha
Helix 46	AF1	C	133	137	Right-handed alpha
Helix 47	AF2	C	139	151	Right-handed alpha
Helix 48	AF3	C	153	155	Right-handed 310
Helix 49	AF4	C	156	168	Right-handed alpha
Helix 50	AF5	C	177	206	Right-handed alpha
Helix 51	AF6	C	211	219	Right-handed alpha
Helix 52	AF7	C	227	260	Right-handed alpha
Helix 53	AF8	C	260	270	Right-handed alpha
Helix 54	AF9	C	273	285	Right-handed alpha
Helix 55	AG1	C	315	320	Right-handed alpha
Helix 56	AG2	C	353	372	Right-handed alpha
Helix 57	AG3	D	23	28	Right-handed alpha
Helix 58	AG4	D	30	41	Right-handed alpha
Helix 59	AG5	D	56	66	Right-handed alpha
Helix 60	AG6	D	81	86	Right-handed 310
Helix 61	AG7	D	89	100	Right-handed alpha
Helix 62	AG8	D	103	108	Right-handed alpha
Helix 63	AG9	D	110	124	Right-handed alpha
Helix 64	AH1	D	133	137	Right-handed alpha
Helix 65	AH2	D	139	151	Right-handed alpha
Helix 66	AH3	D	153	155	Right-handed 310
Helix 67	AH4	D	156	167	Right-handed alpha
Helix 68	AH5	D	175	206	Right-handed alpha
Helix 69	AH6	D	211	219	Right-handed alpha
Helix 70	AH7	D	227	260	Right-handed alpha
Helix 71	AH8	D	260	270	Right-handed alpha
Helix 72	AH9	D	273	285	Right-handed alpha
Helix 73	AI1	D	315	320	Right-handed alpha
Helix 74	AI2	D	353	371	Right-handed alpha

There are 15 sheets in PDB entry 5OFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	312	315	parallel
Strand 4	A	290	291	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	294	295	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	397	400	anti-parallel
Strand 3	A	374	376	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	301	first strand
Strand 2	A	304	306	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	51	54	anti-parallel
Strand 3	B	311	315	parallel
Strand 4	B	290	291	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	294	295	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	397	400	anti-parallel
Strand 3	B	374	376	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	304	306	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	51	54	anti-parallel
Strand 3	C	311	314	parallel
Strand 4	C	291	295	anti-parallel
Strand 5	C	70	71	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	397	400	anti-parallel
Strand 3	C	374	376	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	301	first strand
Strand 2	C	304	306	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	51	54	anti-parallel
Strand 3	D	311	314	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	294	295	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	397	400	anti-parallel
Strand 3	D	374	376	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	301	first strand
Strand 2	D	304	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OFQ