Analysis of interatomic Contacts of Structural Units in PDB entry:
5OFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OFY entry

There is 1 chain in PDB entry 5OFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LYS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5OFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
50 69Right-handed alpha
Helix 4
AA4
A
81 94Right-handed alpha
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
135 147Right-handed alpha
Helix 7
AA7
A
168 176Right-handed alpha
Helix 8
AA8
A
195 199Right-handed 310
Helix 9
AA9
A
223 232Right-handed alpha
Helix 10
AB1
A
243 251Right-handed alpha
Helix 11
AB2
A
265 283Right-handed alpha
Helix 12
AB3
A
283 305Right-handed alpha
Helix 13
AB4
A
313 317Right-handed 310
Helix 14
AB5
A
331 344Right-handed alpha
Helix 15
AB6
A
351 355Right-handed 310
Helix 16
AB7
A
364 368Right-handed 310
Helix 17
AB8
A
369 387Right-handed alpha
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There are 2 sheets in PDB entry 5OFY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
179 183parallel
Strand 5
A
150 154parallel
Strand 6
A
99 104parallel
Strand 7
A
122 127parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
348 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il