Analysis of interatomic Contacts of Structural Units in PDB entry:
5OG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OG9 entry

There are 2 chains in PDB entry 5OG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLY 458
B
 LYS 4GLY 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5OG9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
17 22Right-handed 310
Helix 3
AA3
A
25 38Right-handed alpha
Helix 4
AA4
A
55 63Right-handed alpha
Helix 5
AA5
A
73 75Right-handed 310
Helix 6
AA6
A
76 84Right-handed alpha
Helix 7
AA7
A
94 105Right-handed alpha
Helix 8
AA8
A
106 108Right-handed 310
Helix 9
AA9
A
109 133Right-handed alpha
Helix 10
AB1
A
142 160Right-handed alpha
Helix 11
AB2
A
164 168Right-handed 310
Helix 12
AB3
A
172 188Right-handed alpha
Helix 13
AB4
A
189 191Right-handed 310
Helix 14
AB5
A
196 198Right-handed 310
Helix 15
AB6
A
199 227Right-handed alpha
Helix 16
AB7
A
233 241Right-handed alpha
Helix 17
AB8
A
251 266Right-handed alpha
Helix 18
AB9
A
267 284Right-handed alpha
Helix 19
AC1
A
284 299Right-handed alpha
Helix 20
AC2
A
305 312Right-handed alpha
Helix 21
AC3
A
312 326Right-handed alpha
Helix 22
AC4
A
358 362Right-handed alpha
Helix 23
AC5
A
364 369Right-handed alpha
Helix 24
AC6
A
376 381Right-handed 310
Helix 25
AC7
A
382 386Right-handed 310
Helix 26
AC8
A
396 400Right-handed 310
Helix 27
AC9
A
403 421Right-handed alpha
Helix 28
AD1
B
12 16Right-handed 310
Helix 29
AD2
B
17 22Right-handed 310
Helix 30
AD3
B
25 38Right-handed alpha
Helix 31
AD4
B
55 63Right-handed alpha
Helix 32
AD5
B
73 75Right-handed 310
Helix 33
AD6
B
76 84Right-handed alpha
Helix 34
AD7
B
94 105Right-handed alpha
Helix 35
AD8
B
106 108Right-handed 310
Helix 36
AD9
B
109 133Right-handed alpha
Helix 37
AE1
B
142 160Right-handed alpha
Helix 38
AE2
B
164 168Right-handed 310
Helix 39
AE3
B
172 188Right-handed alpha
Helix 40
AE4
B
189 191Right-handed 310
Helix 41
AE5
B
196 198Right-handed 310
Helix 42
AE6
B
199 227Right-handed alpha
Helix 43
AE7
B
233 241Right-handed alpha
Helix 44
AE8
B
251 266Right-handed alpha
Helix 45
AE9
B
267 284Right-handed alpha
Helix 46
AF1
B
284 299Right-handed alpha
Helix 47
AF2
B
305 312Right-handed alpha
Helix 48
AF3
B
312 326Right-handed alpha
Helix 49
AF4
B
358 362Right-handed alpha
Helix 50
AF5
B
364 369Right-handed alpha
Helix 51
AF6
B
376 381Right-handed 310
Helix 52
AF7
B
382 386Right-handed 310
Helix 53
AF8
B
396 400Right-handed 310
Helix 54
AF9
B
403 421Right-handed alpha
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There are 8 sheets in PDB entry 5OG9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
353 357parallel
Strand 4
A
331 336anti-parallel
Strand 5
A
68 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
422 425anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
346 348anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
440 442anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
48 53anti-parallel
Strand 3
B
353 357parallel
Strand 4
B
331 336anti-parallel
Strand 5
B
68 70anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
446 451anti-parallel
Strand 3
B
422 425anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 342first strand
Strand 2
B
346 348anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
440 442anti-parallel
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