Analysis of interatomic Contacts of Structural Units in PDB entry:
5OGI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OGI entry

There is 1 chain in PDB entry 5OGI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	PRO 667

There are 32 helices in PDB entry 5OGI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	18	23	Right-handed alpha
Helix 3	AA3	A	24	35	Right-handed alpha
Helix 4	AA4	A	40	44	Right-handed 310
Helix 5	AA5	A	268	274	Right-handed alpha
Helix 6	AA6	A	311	316	Right-handed 310
Helix 7	AA7	A	330	333	Right-handed 310
Helix 8	AA8	A	340	344	Right-handed 310
Helix 9	AA9	A	364	377	Right-handed alpha
Helix 10	AB1	A	394	399	Right-handed alpha
Helix 11	AB2	A	462	476	Right-handed alpha
Helix 12	AB3	A	477	480	Right-handed 310
Helix 13	AB4	A	481	485	Right-handed 310
Helix 14	AB5	A	499	506	Right-handed alpha
Helix 15	AB6	A	509	514	Right-handed 310
Helix 16	AB7	A	525	530	Right-handed alpha
Helix 17	AB8	A	539	550	Right-handed alpha
Helix 18	AB9	A	587	591	Right-handed alpha
Helix 19	AC1	A	622	634	Right-handed alpha
Helix 20	AC2	A	635	639	Right-handed 310
Helix 21	AC3	A	685	687	Right-handed 310
Helix 22	AC4	A	704	709	Right-handed alpha
Helix 23	AC5	A	713	715	Right-handed 310
Helix 24	AC6	A	762	774	Right-handed alpha
Helix 25	AC7	A	775	779	Right-handed 310
Helix 26	AC8	A	793	795	Right-handed 310
Helix 27	AC9	A	817	821	Right-handed 310
Helix 28	AD1	A	885	890	Right-handed alpha
Helix 29	AD2	A	890	895	Right-handed alpha
Helix 30	AD3	B	79	83	Right-handed 310
Helix 31	AD4	B	184	187	Right-handed 310
Helix 32	AD5	B	209	213	Right-handed 310

There are 26 sheets in PDB entry 5OGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	606	618	anti-parallel
Strand 3	A	93	107	anti-parallel
Strand 4	A	554	562	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	606	618	anti-parallel
Strand 3	A	93	107	anti-parallel
Strand 4	A	572	573	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	74	first strand
Strand 2	A	78	87	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	346	349	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	163	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	283	288	parallel
Strand 4	A	262	266	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	191	194	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	292	293	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	257	259	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	301	first strand
Strand 2	A	317	320	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	592	594	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	522	523	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	413	first strand
Strand 2	A	459	461	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	425	first strand
Strand 2	A	449	451	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	438	440	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	643	first strand
Strand 2	A	922	928	anti-parallel
Strand 3	A	936	942	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	655	first strand
Strand 2	A	913	920	anti-parallel
Strand 3	A	676	683	anti-parallel
Strand 4	A	870	873	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	669	first strand
Strand 2	A	898	906	anti-parallel
Strand 3	A	717	724	anti-parallel
Strand 4	A	728	730	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	669	first strand
Strand 2	A	898	906	anti-parallel
Strand 3	A	717	724	anti-parallel
Strand 4	A	742	743	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	755	first strand
Strand 2	A	760	761	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	805	first strand
Strand 2	A	857	865	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	141	148	anti-parallel
Strand 3	B	200	205	anti-parallel
Strand 4	B	190	195	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	234	238	parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	157	162	anti-parallel
Strand 5	B	168	174	anti-parallel
Strand 6	B	180	182	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	234	238	parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	227	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OGI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OGI