Analysis of interatomic Contacts of Structural Units in PDB entry:
5OGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OGL entry

There are 3 chains in PDB entry 5OGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 711
B
 GLY 10THR 15
B
 GLY 17GLY 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5OGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 39Right-handed alpha
Helix 2
AA2
A
40 43Right-handed 310
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
82 95Right-handed alpha
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
A
127 141Right-handed alpha
Helix 8
AA8
A
141 147Right-handed alpha
Helix 9
AA9
A
154 159Right-handed 310
Helix 10
AB1
A
160 177Right-handed alpha
Helix 11
AB2
A
180 196Right-handed alpha
Helix 12
AB3
A
199 218Right-handed alpha
Helix 13
AB4
A
221 236Right-handed alpha
Helix 14
AB5
A
239 257Right-handed alpha
Helix 15
AB6
A
262 280Right-handed alpha
Helix 16
AB7
A
283 294Right-handed alpha
Helix 17
AB8
A
312 321Right-handed 310
Helix 18
AB9
A
324 334Right-handed alpha
Helix 19
AC1
A
335 351Right-handed alpha
Helix 20
AC2
A
353 358Right-handed 310
Helix 21
AC3
A
359 373Right-handed alpha
Helix 22
AC4
A
374 379Right-handed 310
Helix 23
AC5
A
380 402Right-handed alpha
Helix 24
AC6
A
407 433Right-handed alpha
Helix 25
AC7
A
440 454Right-handed alpha
Helix 26
AC8
A
463 465Right-handed 310
Helix 27
AC9
A
466 475Right-handed alpha
Helix 28
AD1
A
486 499Right-handed alpha
Helix 29
AD2
A
500 522Right-handed alpha
Helix 30
AD3
A
525 532Right-handed alpha
Helix 31
AD4
A
538 546Right-handed alpha
Helix 32
AD5
A
568 571Right-handed 310
Helix 33
AD6
A
572 581Right-handed alpha
Helix 34
AD7
A
675 679Right-handed alpha
Helix 35
AD8
A
680 686Right-handed alpha
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There are 4 sheets in PDB entry 5OGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
49 50anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 478first strand
Strand 2
A
459 461parallel
Strand 3
A
561 566parallel
Strand 4
A
705 710anti-parallel
Strand 5
A
696 702anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
669 674anti-parallel
Strand 3
A
659 664anti-parallel
Strand 4
A
630 642parallel
Strand 5
A
624 627anti-parallel
Strand 6
A
617 618anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
669 674anti-parallel
Strand 3
A
659 664anti-parallel
Strand 4
A
630 642parallel
Strand 5
A
647 652anti-parallel
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