Analysis of interatomic Contacts of Structural Units in PDB entry:
5OGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OGR entry

There are 3 chains in PDB entry 5OGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 70ASN 323
B
 VAL 70ASN 323
C
 VAL 70ASN 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5OGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 82Right-handed alpha
Helix 2
AA2
A
85 90Right-handed 310
Helix 3
AA3
A
99 117Right-handed alpha
Helix 4
AA4
A
126 134Right-handed alpha
Helix 5
AA5
A
139 143Right-handed 310
Helix 6
AA6
A
145 156Right-handed alpha
Helix 7
AA7
A
210 215Right-handed 310
Helix 8
AA8
A
227 239Right-handed alpha
Helix 9
AA9
A
250 254Right-handed 310
Helix 10
AB1
A
309 313Right-handed 310
Helix 11
AB2
B
78 82Right-handed alpha
Helix 12
AB3
B
85 90Right-handed 310
Helix 13
AB4
B
99 117Right-handed alpha
Helix 14
AB5
B
126 134Right-handed alpha
Helix 15
AB6
B
139 143Right-handed 310
Helix 16
AB7
B
145 156Right-handed alpha
Helix 17
AB8
B
210 215Right-handed 310
Helix 18
AB9
B
227 239Right-handed alpha
Helix 19
AC1
B
250 254Right-handed 310
Helix 20
AC2
B
309 313Right-handed 310
Helix 21
AC3
C
78 82Right-handed alpha
Helix 22
AC4
C
85 90Right-handed 310
Helix 23
AC5
C
99 117Right-handed alpha
Helix 24
AC6
C
126 134Right-handed alpha
Helix 25
AC7
C
139 143Right-handed 310
Helix 26
AC8
C
145 156Right-handed alpha
Helix 27
AC9
C
210 215Right-handed 310
Helix 28
AD1
C
227 239Right-handed alpha
Helix 29
AD2
C
250 254Right-handed 310
Helix 30
AD3
C
309 313Right-handed 310
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There are 8 sheets in PDB entry 5OGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
266 280anti-parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
317 321anti-parallel
Strand 5
A
220 223anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
266 280anti-parallel
Strand 3
A
283 289anti-parallel
Strand 4
A
301 305anti-parallel
Strand 5
A
258 259parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
266 280anti-parallel
Strand 3
B
241 248anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
266 280anti-parallel
Strand 3
B
283 289anti-parallel
Strand 4
B
301 305anti-parallel
Strand 5
B
258 259parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 223first strand
Strand 2
B
318 321anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
266 280anti-parallel
Strand 3
C
241 248anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
266 280anti-parallel
Strand 3
C
283 289anti-parallel
Strand 4
C
301 305anti-parallel
Strand 5
C
258 259parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 223first strand
Strand 2
C
318 321anti-parallel
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