Analysis of interatomic Contacts of Structural Units in PDB entry:
5OGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OGX entry

There is 1 chain in PDB entry 5OGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5OGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
63 69Right-handed alpha
Helix 3
AA3
A
199 203Right-handed 310
Helix 4
AA4
A
216 231Right-handed alpha
Helix 5
AA5
A
246 248Right-handed 310
Helix 6
AA6
A
250 261Right-handed alpha
Helix 7
AA7
A
282 291Right-handed alpha
Helix 8
AA8
A
304 318Right-handed alpha
Helix 9
AA9
A
321 323Right-handed 310
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There are 4 sheets in PDB entry 5OGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
3 7anti-parallel
Strand 3
A
83 86parallel
Strand 4
A
44 49anti-parallel
Strand 5
A
71 73anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
78 79anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
185 192anti-parallel
Strand 4
A
99 112anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
158 164anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
264 273parallel
Strand 3
A
236 244parallel
Strand 4
A
208 213parallel
Strand 5
A
298 303parallel
Strand 6
A
325 329parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il