Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OHC entry

There are 2 chains in PDB entry 5OHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLY 446
B
 PRO 2GLY 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5OHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 23Right-handed alpha
Helix 2
AA2
A
41 52Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
91 96Right-handed alpha
Helix 5
AA5
A
96 101Right-handed alpha
Helix 6
AA6
A
118 132Right-handed alpha
Helix 7
AA7
A
134 163Right-handed alpha
Helix 8
AA8
A
175 180Right-handed 310
Helix 9
AA9
A
184 186Right-handed 310
Helix 10
AB1
A
187 193Right-handed alpha
Helix 11
AB2
A
205 210Right-handed alpha
Helix 12
AB3
A
212 216Right-handed 310
Helix 13
AB4
A
218 235Right-handed alpha
Helix 14
AB5
A
241 246Right-handed alpha
Helix 15
AB6
A
253 273Right-handed alpha
Helix 16
AB7
A
276 297Right-handed alpha
Helix 17
AB8
A
320 323Right-handed 310
Helix 18
AB9
A
324 330Right-handed alpha
Helix 19
AC1
A
333 346Right-handed alpha
Helix 20
AC2
A
381 395Right-handed alpha
Helix 21
AC3
A
397 413Right-handed alpha
Helix 22
AC4
A
434 446Right-handed alpha
Helix 23
AC5
B
8 23Right-handed alpha
Helix 24
AC6
B
41 52Right-handed alpha
Helix 25
AC7
B
55 69Right-handed alpha
Helix 26
AC8
B
91 96Right-handed alpha
Helix 27
AC9
B
96 101Right-handed alpha
Helix 28
AD1
B
118 132Right-handed alpha
Helix 29
AD2
B
134 163Right-handed alpha
Helix 30
AD3
B
175 180Right-handed 310
Helix 31
AD4
B
184 186Right-handed 310
Helix 32
AD5
B
187 192Right-handed alpha
Helix 33
AD6
B
205 210Right-handed alpha
Helix 34
AD7
B
212 216Right-handed 310
Helix 35
AD8
B
218 235Right-handed alpha
Helix 36
AD9
B
241 246Right-handed alpha
Helix 37
AE1
B
253 273Right-handed alpha
Helix 38
AE2
B
276 297Right-handed alpha
Helix 39
AE3
B
320 323Right-handed 310
Helix 40
AE4
B
324 330Right-handed alpha
Helix 41
AE5
B
333 346Right-handed alpha
Helix 42
AE6
B
381 395Right-handed alpha
Helix 43
AE7
B
397 413Right-handed alpha
Helix 44
AE8
B
434 446Right-handed alpha
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There are 6 sheets in PDB entry 5OHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
79 80anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
250 252anti-parallel
Strand 3
A
307 309anti-parallel
Strand 4
A
314 316anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
428 429anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
79 80anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
250 252anti-parallel
Strand 3
B
307 309anti-parallel
Strand 4
B
314 316anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
428 429anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il