Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OHK entry

There are 2 chains in PDB entry 5OHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 64VAL 502
B
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5OHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 88Right-handed alpha
Helix 2
AA2
A
89 101Right-handed alpha
Helix 3
AA3
A
102 105Right-handed 310
Helix 4
AA4
A
115 128Right-handed alpha
Helix 5
AA5
A
140 151Right-handed alpha
Helix 6
AA6
A
161 179Right-handed alpha
Helix 7
AA7
A
265 275Right-handed alpha
Helix 8
AA8
A
352 355Right-handed 310
Helix 9
AA9
A
485 492Right-handed alpha
Helix 10
AB1
B
22 35Right-handed alpha
Helix 11
AB2
B
37 41Right-handed 310
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There are 6 sheets in PDB entry 5OHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
137 138parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 248first strand
Strand 2
A
226 234anti-parallel
Strand 3
A
306 316anti-parallel
Strand 4
A
277 282anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
320 326parallel
Strand 3
A
494 502anti-parallel
Strand 4
A
435 445anti-parallel
Strand 5
A
348 350anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
320 326parallel
Strand 3
A
494 502anti-parallel
Strand 4
A
435 445anti-parallel
Strand 5
A
452 458anti-parallel
Strand 6
A
473 477anti-parallel
Strand 7
A
480 484anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
336 338anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il