Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OHM entry

There are 12 chains in PDB entry 5OHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 74
C	MET 1	ARG 74
E	MET 1	GLY 75
G	MET 1	ARG 74
I	MET 1	LEU 73
K	MET 1	LEU 73
D	ASN 33	VAL 121
H	ASN 33	VAL 121
L	GLU 32	PRO 120
B	GLU 32	PRO 120
F	GLU 32	GLY 122
J	GLU 32	VAL 121

There are 18 helices in PDB entry 5OHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	35	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	C	22	35	Right-handed alpha
Helix 4	AA4	C	37	39	Right-handed 310
Helix 5	AA5	E	22	35	Right-handed alpha
Helix 6	AA6	E	37	39	Right-handed 310
Helix 7	AA7	G	22	35	Right-handed alpha
Helix 8	AA8	G	37	39	Right-handed 310
Helix 9	AA9	I	22	35	Right-handed alpha
Helix 10	AB1	I	37	39	Right-handed 310
Helix 11	AB2	K	22	35	Right-handed alpha
Helix 12	AB3	K	37	39	Right-handed 310
Helix 13	AB4	D	34	53	Right-handed alpha
Helix 14	AB5	H	34	53	Right-handed alpha
Helix 15	AB6	L	34	53	Right-handed alpha
Helix 16	AB7	B	33	53	Right-handed alpha
Helix 17	AB8	F	33	53	Right-handed alpha
Helix 18	AB9	J	33	53	Right-handed alpha

There are 8 sheets in PDB entry 5OHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	2	7	anti-parallel
Strand 3	A	66	71	parallel
Strand 4	A	41	45	anti-parallel
Strand 5	A	48	49	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	2	7	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	16	first strand
Strand 2	G	2	7	anti-parallel
Strand 3	G	66	71	parallel
Strand 4	G	41	45	anti-parallel
Strand 5	G	48	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	16	first strand
Strand 2	I	2	6	anti-parallel
Strand 3	I	66	71	parallel
Strand 4	I	41	44	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	2	6	anti-parallel
Strand 3	K	66	71	parallel
Strand 4	K	41	44	anti-parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	69	first strand
Strand 2	B	74	86	anti-parallel
Strand 3	B	91	104	anti-parallel
Strand 4	B	108	119	anti-parallel
Strand 5	D	108	120	anti-parallel
Strand 6	D	91	103	anti-parallel
Strand 7	D	75	86	anti-parallel
Strand 8	D	57	69	anti-parallel
Strand 9	H	57	70	anti-parallel
Strand 10	H	74	86	anti-parallel
Strand 11	H	91	103	anti-parallel
Strand 12	H	108	120	anti-parallel
Strand 13	F	108	120	anti-parallel
Strand 14	F	91	104	anti-parallel
Strand 15	F	74	86	anti-parallel
Strand 16	F	57	71	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	70	first strand
Strand 2	L	74	86	anti-parallel
Strand 3	L	91	105	anti-parallel
Strand 4	L	108	119	anti-parallel
Strand 5	J	108	120	anti-parallel
Strand 6	J	91	104	anti-parallel
Strand 7	J	74	86	anti-parallel
Strand 8	J	57	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHM