Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OHO entry

There are 2 chains in PDB entry 5OHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 534ALA 646
B
 GLY 534ALA 646
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5OHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
573 575Right-handed 310
Helix 2
AA2
A
630 633Right-handed 310
Helix 3
AA3
B
573 575Right-handed 310
Helix 4
AA4
B
630 633Right-handed 310
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There are 5 sheets in PDB entry 5OHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 571first strand
Strand 2
A
557 562anti-parallel
Strand 3
A
547 553anti-parallel
Strand 4
A
539 541anti-parallel
Strand 5
A
576 577anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 587first strand
Strand 2
A
593 595anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
621 625anti-parallel
Strand 3
A
611 617anti-parallel
Strand 4
A
599 602anti-parallel
Strand 5
A
643 645anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 543first strand
Strand 2
B
546 553anti-parallel
Strand 3
B
557 562anti-parallel
Strand 4
B
567 571anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 639first strand
Strand 2
B
621 625anti-parallel
Strand 3
B
611 618anti-parallel
Strand 4
B
599 602anti-parallel
Strand 5
B
643 645anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il