Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OHT entry

There are 2 chains in PDB entry 5OHT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 9	LEU 679
B	LEU 9	ILE 678

There are 40 helices in PDB entry 5OHT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	169	Right-handed alpha
Helix 2	AA2	A	231	244	Right-handed alpha
Helix 3	AA3	A	250	256	Right-handed 310
Helix 4	AA4	A	264	278	Right-handed alpha
Helix 5	AA5	A	288	291	Right-handed 310
Helix 6	AA6	A	315	326	Right-handed alpha
Helix 7	AA7	A	342	352	Right-handed alpha
Helix 8	AA8	A	379	394	Right-handed alpha
Helix 9	AA9	A	421	444	Right-handed alpha
Helix 10	AB1	A	460	465	Right-handed alpha
Helix 11	AB2	A	482	484	Right-handed 310
Helix 12	AB3	A	485	495	Right-handed alpha
Helix 13	AB4	A	517	529	Right-handed alpha
Helix 14	AB5	A	541	545	Right-handed 310
Helix 15	AB6	A	551	568	Right-handed alpha
Helix 16	AB7	A	568	583	Right-handed alpha
Helix 17	AB8	A	589	593	Right-handed 310
Helix 18	AB9	A	597	603	Right-handed 310
Helix 19	AC1	A	668	674	Right-handed alpha
Helix 20	AC2	A	675	678	Right-handed 310
Helix 21	AC3	B	161	169	Right-handed alpha
Helix 22	AC4	B	231	244	Right-handed alpha
Helix 23	AC5	B	250	256	Right-handed 310
Helix 24	AC6	B	264	278	Right-handed alpha
Helix 25	AC7	B	288	291	Right-handed 310
Helix 26	AC8	B	315	326	Right-handed alpha
Helix 27	AC9	B	342	352	Right-handed alpha
Helix 28	AD1	B	379	394	Right-handed alpha
Helix 29	AD2	B	421	444	Right-handed alpha
Helix 30	AD3	B	460	465	Right-handed alpha
Helix 31	AD4	B	482	484	Right-handed 310
Helix 32	AD5	B	485	495	Right-handed alpha
Helix 33	AD6	B	517	529	Right-handed alpha
Helix 34	AD7	B	541	545	Right-handed 310
Helix 35	AD8	B	551	568	Right-handed alpha
Helix 36	AD9	B	568	583	Right-handed alpha
Helix 37	AE1	B	589	593	Right-handed 310
Helix 38	AE2	B	597	603	Right-handed 310
Helix 39	AE3	B	668	674	Right-handed alpha
Helix 40	AE4	B	675	678	Right-handed 310

There are 20 sheets in PDB entry 5OHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	15	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	27	32	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	66	first strand
Strand 2	A	39	51	anti-parallel
Strand 3	A	116	122	anti-parallel
Strand 4	A	212	217	anti-parallel
Strand 5	A	203	206	anti-parallel
Strand 6	A	145	148	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	78	84	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	103	109	anti-parallel
Strand 5	A	221	228	anti-parallel
Strand 6	A	193	197	anti-parallel
Strand 7	A	183	189	anti-parallel
Strand 8	A	129	133	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	282	286	parallel
Strand 3	A	329	334	parallel
Strand 4	A	401	404	parallel
Strand 5	A	451	454	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	299	302	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	371	374	anti-parallel
Strand 3	A	364	366	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	501	502	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	535	536	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	607	609	anti-parallel
Strand 3	A	613	615	anti-parallel
Strand 4	A	660	663	anti-parallel
Strand 5	A	635	637	anti-parallel
Strand 6	A	643	644	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	630	first strand
Strand 2	A	647	652	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	20	24	anti-parallel
Strand 3	B	27	32	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	66	first strand
Strand 2	B	39	51	anti-parallel
Strand 3	B	116	122	anti-parallel
Strand 4	B	212	217	anti-parallel
Strand 5	B	203	206	anti-parallel
Strand 6	B	145	148	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	75	first strand
Strand 2	B	78	84	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	103	109	anti-parallel
Strand 5	B	221	228	anti-parallel
Strand 6	B	193	197	anti-parallel
Strand 7	B	183	189	anti-parallel
Strand 8	B	129	133	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	282	286	parallel
Strand 3	B	329	334	parallel
Strand 4	B	401	404	parallel
Strand 5	B	451	454	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	299	302	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	371	374	anti-parallel
Strand 3	B	364	366	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	501	502	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	535	536	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	607	609	anti-parallel
Strand 3	B	613	615	anti-parallel
Strand 4	B	660	663	anti-parallel
Strand 5	B	635	637	anti-parallel
Strand 6	B	643	644	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	625	630	first strand
Strand 2	B	647	652	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OHT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OHT