Analysis of interatomic Contacts of Structural Units in PDB entry:
5OI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OI9 entry

There are 2 chains in PDB entry 5OI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 13GLN 357
B
 LYS 13GLN 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5OI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 59Right-handed alpha
Helix 2
AA2
A
135 153Right-handed alpha
Helix 3
AA3
A
158 163Right-handed 310
Helix 4
AA4
A
206 214Right-handed alpha
Helix 5
AA5
A
215 218Right-handed 310
Helix 6
AA6
A
245 250Right-handed 310
Helix 7
AA7
A
266 279Right-handed alpha
Helix 8
AA8
B
42 59Right-handed alpha
Helix 9
AA9
B
135 153Right-handed alpha
Helix 10
AB1
B
158 163Right-handed 310
Helix 11
AB2
B
206 213Right-handed alpha
Helix 12
AB3
B
245 250Right-handed 310
Helix 13
AB4
B
266 279Right-handed alpha
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There are 6 sheets in PDB entry 5OI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
306 311anti-parallel
Strand 4
A
293 299anti-parallel
Strand 5
A
253 261parallel
Strand 6
A
226 232anti-parallel
Strand 7
A
238 242anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 331first strand
Strand 2
A
177 189anti-parallel
Strand 3
A
164 173anti-parallel
Strand 4
A
115 123parallel
Strand 5
A
66 76anti-parallel
Strand 6
A
82 90anti-parallel
Strand 7
A
36 41parallel
Strand 8
A
340 345anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
105 106anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
193 197anti-parallel
Strand 3
B
306 311anti-parallel
Strand 4
B
293 299anti-parallel
Strand 5
B
253 261parallel
Strand 6
B
226 232anti-parallel
Strand 7
B
238 242anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 331first strand
Strand 2
B
177 189anti-parallel
Strand 3
B
164 173anti-parallel
Strand 4
B
115 123parallel
Strand 5
B
66 76anti-parallel
Strand 6
B
82 90anti-parallel
Strand 7
B
36 41parallel
Strand 8
B
340 345anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
105 106anti-parallel
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