Analysis of interatomic Contacts of Structural Units in PDB entry:
5OID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OID entry

There are 2 chains in PDB entry 5OID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 13ASN 348
B
 GLU 616ARG 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5OID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 59Right-handed alpha
Helix 2
AA2
A
138 153Right-handed alpha
Helix 3
AA3
A
158 163Right-handed 310
Helix 4
AA4
A
206 213Right-handed alpha
Helix 5
AA5
A
245 250Right-handed 310
Helix 6
AA6
A
266 279Right-handed alpha
Helix 7
AA7
B
617 653Right-handed alpha
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There are 3 sheets in PDB entry 5OID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
306 311anti-parallel
Strand 4
A
293 299anti-parallel
Strand 5
A
255 261parallel
Strand 6
A
226 232anti-parallel
Strand 7
A
238 242anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
82 90parallel
Strand 4
A
65 76anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
164 173parallel
Strand 7
A
177 189anti-parallel
Strand 8
A
319 331anti-parallel
Strand 9
A
346 347anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
104 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il