Analysis of interatomic Contacts of Structural Units in PDB entry:
5OIU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OIU entry

There are 6 chains in PDB entry 5OIU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	GLU 400
B	GLU 15	ILE 399
C	GLU 15	GLU 400
D	GLU 15	GLU 400
E	GLU 15	GLU 400
F	GLU 15	GLU 400

There are104 helices in PDB entry 5OIU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	33	Right-handed alpha
Helix 2	AA2	A	66	78	Right-handed alpha
Helix 3	AA3	A	124	128	Right-handed 310
Helix 4	AA4	A	130	134	Right-handed 310
Helix 5	AA5	A	137	149	Right-handed alpha
Helix 6	AA6	A	164	177	Right-handed alpha
Helix 7	AA7	A	209	218	Right-handed alpha
Helix 8	AA8	A	232	246	Right-handed alpha
Helix 9	AA9	A	258	268	Right-handed alpha
Helix 10	AB1	A	271	278	Right-handed alpha
Helix 11	AB2	A	302	309	Right-handed alpha
Helix 12	AB3	A	312	317	Right-handed alpha
Helix 13	AB4	A	327	331	Right-handed 310
Helix 14	AB5	A	348	357	Right-handed alpha
Helix 15	AB6	A	360	371	Right-handed alpha
Helix 16	AB7	A	375	385	Right-handed alpha
Helix 17	AB8	A	390	398	Right-handed alpha
Helix 18	AB9	B	16	33	Right-handed alpha
Helix 19	AC1	B	66	79	Right-handed alpha
Helix 20	AC2	B	124	128	Right-handed 310
Helix 21	AC3	B	130	134	Right-handed 310
Helix 22	AC4	B	137	149	Right-handed alpha
Helix 23	AC5	B	164	177	Right-handed alpha
Helix 24	AC6	B	203	207	Right-handed 310
Helix 25	AC7	B	209	218	Right-handed alpha
Helix 26	AC8	B	232	246	Right-handed alpha
Helix 27	AC9	B	258	268	Right-handed alpha
Helix 28	AD1	B	271	278	Right-handed alpha
Helix 29	AD2	B	302	309	Right-handed alpha
Helix 30	AD3	B	312	318	Right-handed alpha
Helix 31	AD4	B	327	331	Right-handed 310
Helix 32	AD5	B	348	357	Right-handed alpha
Helix 33	AD6	B	360	371	Right-handed alpha
Helix 34	AD7	B	375	385	Right-handed alpha
Helix 35	AD8	B	390	397	Right-handed alpha
Helix 36	AD9	C	16	33	Right-handed alpha
Helix 37	AE1	C	63	65	Right-handed 310
Helix 38	AE2	C	66	78	Right-handed alpha
Helix 39	AE3	C	130	134	Right-handed 310
Helix 40	AE4	C	137	149	Right-handed alpha
Helix 41	AE5	C	164	177	Right-handed alpha
Helix 42	AE6	C	209	217	Right-handed alpha
Helix 43	AE7	C	218	220	Right-handed 310
Helix 44	AE8	C	232	246	Right-handed alpha
Helix 45	AE9	C	257	268	Right-handed alpha
Helix 46	AF1	C	271	278	Right-handed alpha
Helix 47	AF2	C	302	309	Right-handed alpha
Helix 48	AF3	C	312	319	Right-handed alpha
Helix 49	AF4	C	327	331	Right-handed 310
Helix 50	AF5	C	348	358	Right-handed alpha
Helix 51	AF6	C	360	371	Right-handed alpha
Helix 52	AF7	C	375	385	Right-handed alpha
Helix 53	AF8	C	390	398	Right-handed alpha
Helix 54	AF9	D	16	33	Right-handed alpha
Helix 55	AG1	D	66	78	Right-handed alpha
Helix 56	AG2	D	130	134	Right-handed 310
Helix 57	AG3	D	137	149	Right-handed alpha
Helix 58	AG4	D	164	177	Right-handed alpha
Helix 59	AG5	D	209	218	Right-handed alpha
Helix 60	AG6	D	232	245	Right-handed alpha
Helix 61	AG7	D	257	269	Right-handed alpha
Helix 62	AG8	D	271	278	Right-handed alpha
Helix 63	AG9	D	302	309	Right-handed alpha
Helix 64	AH1	D	312	317	Right-handed alpha
Helix 65	AH2	D	327	331	Right-handed 310
Helix 66	AH3	D	348	358	Right-handed alpha
Helix 67	AH4	D	360	371	Right-handed alpha
Helix 68	AH5	D	375	386	Right-handed alpha
Helix 69	AH6	D	390	398	Right-handed alpha
Helix 70	AH7	E	16	33	Right-handed alpha
Helix 71	AH8	E	63	65	Right-handed 310
Helix 72	AH9	E	66	78	Right-handed alpha
Helix 73	AI1	E	124	128	Right-handed 310
Helix 74	AI2	E	130	134	Right-handed 310
Helix 75	AI3	E	137	149	Right-handed alpha
Helix 76	AI4	E	164	177	Right-handed alpha
Helix 77	AI5	E	209	218	Right-handed alpha
Helix 78	AI6	E	232	246	Right-handed alpha
Helix 79	AI7	E	258	268	Right-handed alpha
Helix 80	AI8	E	271	278	Right-handed alpha
Helix 81	AI9	E	302	310	Right-handed alpha
Helix 82	AJ1	E	312	319	Right-handed alpha
Helix 83	AJ2	E	327	331	Right-handed 310
Helix 84	AJ3	E	348	357	Right-handed alpha
Helix 85	AJ4	E	360	371	Right-handed alpha
Helix 86	AJ5	E	375	385	Right-handed alpha
Helix 87	AJ6	E	390	397	Right-handed alpha
Helix 88	AJ7	F	16	32	Right-handed alpha
Helix 89	AJ8	F	63	65	Right-handed 310
Helix 90	AJ9	F	66	78	Right-handed alpha
Helix 91	AK1	F	124	128	Right-handed 310
Helix 92	AK2	F	130	134	Right-handed 310
Helix 93	AK3	F	137	149	Right-handed alpha
Helix 94	AK4	F	164	177	Right-handed alpha
Helix 95	AK5	F	209	218	Right-handed alpha
Helix 96	AK6	F	232	246	Right-handed alpha
Helix 97	AK7	F	258	268	Right-handed alpha
Helix 98	AK8	F	271	278	Right-handed alpha
Helix 99	AK9	F	302	309	Right-handed alpha
Helix 100	AL1	F	312	319	Right-handed alpha
Helix 101	AL2	F	348	358	Right-handed alpha
Helix 102	AL3	F	360	371	Right-handed alpha
Helix 103	AL4	F	375	385	Right-handed alpha
Helix 104	AL5	F	390	398	Right-handed alpha

There are 18 sheets in PDB entry 5OIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	63	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	36	41	anti-parallel
Strand 4	A	114	122	anti-parallel
Strand 5	A	100	111	anti-parallel
Strand 6	A	89	97	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	183	187	parallel
Strand 3	A	224	227	parallel
Strand 4	A	248	253	parallel
Strand 5	A	153	158	parallel
Strand 6	A	279	291	parallel
Strand 7	A	335	346	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	321	324	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	63	first strand
Strand 2	B	45	52	anti-parallel
Strand 3	B	36	41	anti-parallel
Strand 4	B	114	121	anti-parallel
Strand 5	B	100	111	anti-parallel
Strand 6	B	89	97	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	201	first strand
Strand 2	B	183	187	parallel
Strand 3	B	224	227	parallel
Strand 4	B	248	253	parallel
Strand 5	B	153	158	parallel
Strand 6	B	279	291	parallel
Strand 7	B	335	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	321	324	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	62	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	36	41	anti-parallel
Strand 4	C	114	121	anti-parallel
Strand 5	C	100	111	anti-parallel
Strand 6	C	89	97	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	201	first strand
Strand 2	C	183	187	parallel
Strand 3	C	224	227	parallel
Strand 4	C	248	253	parallel
Strand 5	C	153	158	parallel
Strand 6	C	279	291	parallel
Strand 7	C	335	346	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	321	324	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	63	first strand
Strand 2	D	45	52	anti-parallel
Strand 3	D	36	41	anti-parallel
Strand 4	D	114	121	anti-parallel
Strand 5	D	100	111	anti-parallel
Strand 6	D	89	97	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	201	first strand
Strand 2	D	183	187	parallel
Strand 3	D	224	227	parallel
Strand 4	D	248	253	parallel
Strand 5	D	153	158	parallel
Strand 6	D	279	291	parallel
Strand 7	D	335	346	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	299	first strand
Strand 2	D	321	324	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	62	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	34	41	anti-parallel
Strand 4	E	114	122	anti-parallel
Strand 5	E	100	111	anti-parallel
Strand 6	E	89	97	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	201	first strand
Strand 2	E	183	187	parallel
Strand 3	E	224	227	parallel
Strand 4	E	248	253	parallel
Strand 5	E	153	158	parallel
Strand 6	E	279	291	parallel
Strand 7	E	335	346	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	299	first strand
Strand 2	E	321	324	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	62	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	36	41	anti-parallel
Strand 4	F	114	121	anti-parallel
Strand 5	F	100	111	anti-parallel
Strand 6	F	89	97	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	201	first strand
Strand 2	F	183	187	parallel
Strand 3	F	224	227	parallel
Strand 4	F	248	253	parallel
Strand 5	F	153	158	parallel
Strand 6	F	279	291	parallel
Strand 7	F	335	346	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	296	299	first strand
Strand 2	F	321	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OIU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OIU