Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OJ1 entry

There is 1 chain in PDB entry 5OJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 72ASP 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5OJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 117Right-handed 310
Helix 2
AA2
A
118 131Right-handed alpha
Helix 3
AA3
A
133 142Right-handed alpha
Helix 4
AA4
A
151 156Right-handed alpha
Helix 5
AA5
A
159 171Right-handed alpha
Helix 6
AA6
A
194 199Right-handed alpha
Helix 7
AA7
A
217 223Right-handed alpha
Helix 8
AA8
A
223 229Right-handed alpha
Helix 9
AA9
A
266 285Right-handed alpha
Helix 10
AB1
A
335 338Right-handed 310
Helix 11
AB2
A
339 350Right-handed alpha
Helix 12
AB3
A
373 379Right-handed alpha
Helix 13
AB4
A
388 394Right-handed alpha
Helix 14
AB5
A
397 408Right-handed alpha
Helix 15
AB6
A
408 419Right-handed alpha
Helix 16
AB7
A
441 448Right-handed alpha
Helix 17
AB8
A
449 451Right-handed 310
Helix 18
AB9
A
457 470Right-handed alpha
Helix 19
AC1
A
505 521Right-handed alpha
Helix 20
AC2
A
596 619Right-handed alpha
Helix 21
AC3
A
645 656Right-handed alpha
Helix 22
AC4
A
703 714Right-handed alpha
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There are 9 sheets in PDB entry 5OJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 187first strand
Strand 2
A
86 96anti-parallel
Strand 3
A
79 80anti-parallel
Strand 4
A
260 263parallel
Strand 5
A
480 485anti-parallel
Strand 6
A
490 493anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
148 149anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
211 215anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 307first strand
Strand 2
A
288 295anti-parallel
Strand 3
A
583 590anti-parallel
Strand 4
A
569 576anti-parallel
Strand 5
A
545 549anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
386 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
498 500anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
534 535anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 663first strand
Strand 2
A
685 690parallel
Strand 3
A
669 672anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 721first strand
Strand 2
A
743 749parallel
Strand 3
A
726 730anti-parallel
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