Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OJ2 entry

There are 2 chains in PDB entry 5OJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	GLU 735
B	GLN 19	PRO 638

There are 13 helices in PDB entry 5OJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	205	209	Right-handed 310
Helix 2	AA2	A	220	224	Right-handed 310
Helix 3	AA3	A	299	303	Right-handed 310
Helix 4	AA4	A	363	365	Right-handed 310
Helix 5	AA5	A	406	410	Right-handed 310
Helix 6	AA6	A	504	508	Right-handed 310
Helix 7	AA7	A	660	664	Right-handed 310
Helix 8	AA8	B	205	209	Right-handed 310
Helix 9	AA9	B	220	224	Right-handed 310
Helix 10	AB1	B	299	303	Right-handed 310
Helix 11	AB2	B	363	365	Right-handed 310
Helix 12	AB3	B	406	410	Right-handed 310
Helix 13	AB4	B	504	508	Right-handed 310

There are 36 sheets in PDB entry 5OJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	33	first strand
Strand 2	A	56	65	anti-parallel
Strand 3	A	92	95	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	118	129	parallel
Strand 3	A	104	111	anti-parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	88	89	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	118	129	parallel
Strand 3	A	161	162	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	143	first strand
Strand 2	A	146	158	anti-parallel
Strand 3	A	196	201	anti-parallel
Strand 4	A	185	187	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	170	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	227	232	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	244	first strand
Strand 2	A	258	268	anti-parallel
Strand 3	A	292	295	anti-parallel
Strand 4	A	286	288	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	318	326	parallel
Strand 3	A	304	311	anti-parallel
Strand 4	A	272	278	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	398	402	anti-parallel
Strand 3	A	353	361	anti-parallel
Strand 4	A	329	337	anti-parallel
Strand 5	A	520	521	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	373	first strand
Strand 2	A	412	419	anti-parallel
Strand 3	A	427	432	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	443	first strand
Strand 2	A	464	468	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	454	first strand
Strand 2	A	527	541	parallel
Strand 3	A	509	515	anti-parallel
Strand 4	A	473	477	anti-parallel
Strand 5	A	491	493	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	454	first strand
Strand 2	A	527	541	parallel
Strand 3	A	555	565	anti-parallel
Strand 4	A	591	596	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	462	first strand
Strand 2	A	497	500	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	548	first strand
Strand 2	A	617	625	parallel
Strand 3	A	605	612	anti-parallel
Strand 4	A	571	576	anti-parallel
Strand 5	A	579	580	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	649	658	anti-parallel
Strand 3	A	640	642	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	649	658	anti-parallel
Strand 3	A	698	706	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	688	first strand
Strand 2	A	669	675	anti-parallel
Strand 3	A	711	719	anti-parallel
Strand 4	A	722	723	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	688	first strand
Strand 2	A	669	675	anti-parallel
Strand 3	A	711	719	anti-parallel
Strand 4	A	727	731	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	31	first strand
Strand 2	B	56	65	anti-parallel
Strand 3	B	92	95	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	118	129	parallel
Strand 3	B	104	111	anti-parallel
Strand 4	B	69	74	anti-parallel
Strand 5	B	88	89	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	118	129	parallel
Strand 3	B	161	162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	143	first strand
Strand 2	B	146	158	anti-parallel
Strand 3	B	196	201	anti-parallel
Strand 4	B	185	187	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	211	217	anti-parallel
Strand 4	B	227	232	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	244	first strand
Strand 2	B	258	268	anti-parallel
Strand 3	B	292	295	anti-parallel
Strand 4	B	286	288	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	318	326	parallel
Strand 3	B	304	311	anti-parallel
Strand 4	B	272	278	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	398	402	anti-parallel
Strand 3	B	353	361	anti-parallel
Strand 4	B	329	337	anti-parallel
Strand 5	B	520	521	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	373	first strand
Strand 2	B	412	419	anti-parallel
Strand 3	B	427	432	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	443	first strand
Strand 2	B	464	468	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	454	first strand
Strand 2	B	527	541	parallel
Strand 3	B	509	515	anti-parallel
Strand 4	B	473	477	anti-parallel
Strand 5	B	491	493	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	454	first strand
Strand 2	B	527	541	parallel
Strand 3	B	555	565	anti-parallel
Strand 4	B	591	596	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	462	first strand
Strand 2	B	497	500	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	548	first strand
Strand 2	B	617	625	parallel
Strand 3	B	605	612	anti-parallel
Strand 4	B	571	576	anti-parallel
Strand 5	B	579	580	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	650	658	anti-parallel
Strand 3	B	640	642	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	650	658	anti-parallel
Strand 3	B	698	705	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	688	first strand
Strand 2	B	669	676	anti-parallel
Strand 3	B	711	719	anti-parallel
Strand 4	B	722	723	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	688	first strand
Strand 2	B	669	676	anti-parallel
Strand 3	B	711	719	anti-parallel
Strand 4	B	727	731	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ2