Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OJ3 entry

There are 2 chains in PDB entry 5OJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 107	VAL 437
B	ALA 107	ASN 436

There are 7 helices in PDB entry 5OJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	255	Right-handed alpha
Helix 2	AA2	A	261	266	Right-handed alpha
Helix 3	AA3	A	321	323	Right-handed 310
Helix 4	AA4	A	434	437	Right-handed 310
Helix 5	AA5	B	163	168	Right-handed 310
Helix 6	AA6	B	249	255	Right-handed alpha
Helix 7	AA7	B	321	323	Right-handed 310

There are 14 sheets in PDB entry 5OJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	429	432	anti-parallel
Strand 3	A	420	424	anti-parallel
Strand 4	A	409	414	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	125	first strand
Strand 2	A	133	137	anti-parallel
Strand 3	A	142	145	anti-parallel
Strand 4	A	153	154	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	179	185	anti-parallel
Strand 3	A	188	192	anti-parallel
Strand 4	A	200	202	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	219	first strand
Strand 2	A	222	227	anti-parallel
Strand 3	A	232	235	anti-parallel
Strand 4	A	243	244	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	292	296	anti-parallel
Strand 4	A	304	307	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	319	first strand
Strand 2	A	328	332	anti-parallel
Strand 3	A	336	339	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	371	first strand
Strand 2	A	377	381	anti-parallel
Strand 3	A	386	389	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	429	432	anti-parallel
Strand 3	B	420	424	anti-parallel
Strand 4	B	409	414	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	125	first strand
Strand 2	B	133	137	anti-parallel
Strand 3	B	142	145	anti-parallel
Strand 4	B	153	154	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	176	first strand
Strand 2	B	179	185	anti-parallel
Strand 3	B	188	192	anti-parallel
Strand 4	B	199	202	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	219	first strand
Strand 2	B	222	227	anti-parallel
Strand 3	B	232	235	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	292	296	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	319	first strand
Strand 2	B	328	332	anti-parallel
Strand 3	B	337	339	anti-parallel
Strand 4	B	355	356	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	371	first strand
Strand 2	B	377	381	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	395	398	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ3