Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OJ6 entry

There are 2 chains in PDB entry 5OJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 51	LEU 633
B	GLN 19	MET 734

There are 31 helices in PDB entry 5OJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	94	Right-handed 310
Helix 2	AA2	A	132	137	Right-handed alpha
Helix 3	AA3	A	138	146	Right-handed alpha
Helix 4	AA4	A	205	209	Right-handed 310
Helix 5	AA5	A	211	219	Right-handed alpha
Helix 6	AA6	A	229	235	Right-handed alpha
Helix 7	AA7	A	245	262	Right-handed alpha
Helix 8	AA8	A	263	265	Right-handed 310
Helix 9	AA9	A	278	289	Right-handed alpha
Helix 10	AB1	A	290	294	Right-handed 310
Helix 11	AB2	A	325	338	Right-handed alpha
Helix 12	AB3	A	343	352	Right-handed alpha
Helix 13	AB4	A	355	361	Right-handed alpha
Helix 14	AB5	A	385	392	Right-handed alpha
Helix 15	AB6	A	409	415	Right-handed alpha
Helix 16	AB7	A	424	440	Right-handed alpha
Helix 17	AB8	A	445	457	Right-handed alpha
Helix 18	AB9	A	465	482	Right-handed alpha
Helix 19	AC1	A	482	496	Right-handed alpha
Helix 20	AC2	A	525	530	Right-handed alpha
Helix 21	AC3	A	531	536	Right-handed 310
Helix 22	AC4	A	546	567	Right-handed alpha
Helix 23	AC5	A	616	625	Right-handed alpha
Helix 24	AC6	A	625	630	Right-handed alpha
Helix 25	AC7	B	205	209	Right-handed 310
Helix 26	AC8	B	220	224	Right-handed 310
Helix 27	AC9	B	299	303	Right-handed 310
Helix 28	AD1	B	363	365	Right-handed 310
Helix 29	AD2	B	406	410	Right-handed 310
Helix 30	AD3	B	504	508	Right-handed 310
Helix 31	AD4	B	660	664	Right-handed 310

There are 20 sheets in PDB entry 5OJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	60	63	anti-parallel
Strand 3	A	107	109	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	77	84	anti-parallel
Strand 3	A	155	161	anti-parallel
Strand 4	A	221	225	anti-parallel
Strand 5	A	190	195	parallel
Strand 6	A	267	277	parallel
Strand 7	A	308	312	parallel
Strand 8	A	399	405	parallel
Strand 9	A	500	505	parallel
Strand 10	A	601	605	parallel
Strand 11	A	610	613	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	33	first strand
Strand 2	B	56	65	anti-parallel
Strand 3	B	92	95	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	118	129	parallel
Strand 3	B	104	111	anti-parallel
Strand 4	B	69	75	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	118	129	parallel
Strand 3	B	161	162	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	153	158	anti-parallel
Strand 3	B	196	201	anti-parallel
Strand 4	B	185	187	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	227	232	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	244	first strand
Strand 2	B	258	268	anti-parallel
Strand 3	B	292	295	anti-parallel
Strand 4	B	286	288	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	318	326	parallel
Strand 3	B	304	311	anti-parallel
Strand 4	B	272	278	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	398	402	anti-parallel
Strand 3	B	353	361	anti-parallel
Strand 4	B	329	337	anti-parallel
Strand 5	B	520	521	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	373	first strand
Strand 2	B	412	419	anti-parallel
Strand 3	B	427	432	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	443	first strand
Strand 2	B	464	468	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	454	first strand
Strand 2	B	527	541	parallel
Strand 3	B	509	515	anti-parallel
Strand 4	B	473	477	anti-parallel
Strand 5	B	491	493	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	454	first strand
Strand 2	B	527	541	parallel
Strand 3	B	555	565	anti-parallel
Strand 4	B	591	596	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	462	first strand
Strand 2	B	497	500	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	548	first strand
Strand 2	B	617	625	parallel
Strand 3	B	605	612	anti-parallel
Strand 4	B	571	576	anti-parallel
Strand 5	B	579	580	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	649	658	anti-parallel
Strand 3	B	640	642	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	649	658	anti-parallel
Strand 3	B	698	706	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	688	first strand
Strand 2	B	669	675	anti-parallel
Strand 3	B	710	719	anti-parallel
Strand 4	B	722	723	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	688	first strand
Strand 2	B	669	675	anti-parallel
Strand 3	B	710	719	anti-parallel
Strand 4	B	727	732	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJ6