Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OJJ entry

There are 6 chains in PDB entry 5OJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4LYS 154
B
 ALA 4LYS 154
C
 ALA 4ARG 152
D
 ALA 4LYS 154
E
 GLN 2GLN 153
F
 ALA 4GLN 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5OJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
103 117Right-handed alpha
Helix 4
AA4
A
125 135Right-handed alpha
Helix 5
AA5
A
135 151Right-handed alpha
Helix 6
AA6
B
5 17Right-handed alpha
Helix 7
AA7
B
87 91Right-handed 310
Helix 8
AA8
B
103 117Right-handed alpha
Helix 9
AA9
B
125 135Right-handed alpha
Helix 10
AB1
B
135 151Right-handed alpha
Helix 11
AB2
C
5 17Right-handed alpha
Helix 12
AB3
C
87 91Right-handed 310
Helix 13
AB4
C
103 117Right-handed alpha
Helix 14
AB5
C
125 135Right-handed alpha
Helix 15
AB6
C
135 151Right-handed alpha
Helix 16
AB7
D
5 17Right-handed alpha
Helix 17
AB8
D
87 91Right-handed 310
Helix 18
AB9
D
103 117Right-handed alpha
Helix 19
AC1
D
125 135Right-handed alpha
Helix 20
AC2
D
135 151Right-handed alpha
Helix 21
AC3
E
3 17Right-handed alpha
Helix 22
AC4
E
87 91Right-handed 310
Helix 23
AC5
E
103 117Right-handed alpha
Helix 24
AC6
E
125 135Right-handed alpha
Helix 25
AC7
E
135 151Right-handed alpha
Helix 26
AC8
F
5 17Right-handed alpha
Helix 27
AC9
F
87 91Right-handed 310
Helix 28
AD1
F
103 117Right-handed alpha
Helix 29
AD2
F
125 135Right-handed alpha
Helix 30
AD3
F
135 151Right-handed alpha
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There are 8 sheets in PDB entry 5OJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
C
31 39anti-parallel
Strand 3
C
50 57anti-parallel
Strand 4
C
67 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
152 153anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
31 39anti-parallel
Strand 4
B
22 26anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 70first strand
Strand 2
B
50 57anti-parallel
Strand 3
B
31 39anti-parallel
Strand 4
C
22 26anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 26first strand
Strand 2
E
31 39anti-parallel
Strand 3
E
50 57anti-parallel
Strand 4
E
67 70anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 70first strand
Strand 2
D
49 57anti-parallel
Strand 3
D
152 153anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 70first strand
Strand 2
D
49 57anti-parallel
Strand 3
D
31 39anti-parallel
Strand 4
F
22 26anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 26first strand
Strand 2
F
32 39anti-parallel
Strand 3
F
50 57anti-parallel
Strand 4
F
67 70anti-parallel
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