Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OJK entry

There are 2 chains in PDB entry 5OJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 52HIS 631
B
 ASP 52LEU 630
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5OJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 94Right-handed 310
Helix 2
AA2
A
132 138Right-handed alpha
Helix 3
AA3
A
138 145Right-handed alpha
Helix 4
AA4
A
205 209Right-handed 310
Helix 5
AA5
A
211 219Right-handed alpha
Helix 6
AA6
A
229 235Right-handed alpha
Helix 7
AA7
A
245 262Right-handed alpha
Helix 8
AA8
A
263 265Right-handed 310
Helix 9
AA9
A
278 289Right-handed alpha
Helix 10
AB1
A
290 294Right-handed 310
Helix 11
AB2
A
325 337Right-handed alpha
Helix 12
AB3
A
343 352Right-handed alpha
Helix 13
AB4
A
355 361Right-handed alpha
Helix 14
AB5
A
385 392Right-handed alpha
Helix 15
AB6
A
409 414Right-handed alpha
Helix 16
AB7
A
424 440Right-handed alpha
Helix 17
AB8
A
446 457Right-handed alpha
Helix 18
AB9
A
459 463Right-handed 310
Helix 19
AC1
A
465 482Right-handed alpha
Helix 20
AC2
A
482 496Right-handed alpha
Helix 21
AC3
A
525 531Right-handed alpha
Helix 22
AC4
A
531 536Right-handed alpha
Helix 23
AC5
A
546 567Right-handed alpha
Helix 24
AC6
A
616 625Right-handed alpha
Helix 25
AC7
A
625 630Right-handed alpha
Helix 26
AC8
B
90 94Right-handed 310
Helix 27
AC9
B
132 138Right-handed alpha
Helix 28
AD1
B
138 145Right-handed alpha
Helix 29
AD2
B
205 209Right-handed 310
Helix 30
AD3
B
211 219Right-handed alpha
Helix 31
AD4
B
229 235Right-handed alpha
Helix 32
AD5
B
245 262Right-handed alpha
Helix 33
AD6
B
263 265Right-handed 310
Helix 34
AD7
B
278 289Right-handed alpha
Helix 35
AD8
B
290 294Right-handed 310
Helix 36
AD9
B
325 337Right-handed alpha
Helix 37
AE1
B
343 352Right-handed alpha
Helix 38
AE2
B
355 361Right-handed alpha
Helix 39
AE3
B
385 392Right-handed alpha
Helix 40
AE4
B
409 414Right-handed alpha
Helix 41
AE5
B
424 440Right-handed alpha
Helix 42
AE6
B
446 457Right-handed alpha
Helix 43
AE7
B
459 463Right-handed 310
Helix 44
AE8
B
465 482Right-handed alpha
Helix 45
AE9
B
482 496Right-handed alpha
Helix 46
AF1
B
525 531Right-handed alpha
Helix 47
AF2
B
531 536Right-handed alpha
Helix 48
AF3
B
546 567Right-handed alpha
Helix 49
AF4
B
616 625Right-handed alpha
Helix 50
AF5
B
625 630Right-handed alpha
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There are 4 sheets in PDB entry 5OJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
107 109parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
77 84anti-parallel
Strand 3
A
155 160anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
190 195parallel
Strand 6
A
267 277parallel
Strand 7
A
308 312parallel
Strand 8
A
399 405parallel
Strand 9
A
500 505parallel
Strand 10
A
601 605parallel
Strand 11
A
610 613anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
60 63anti-parallel
Strand 3
B
107 109parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
77 84anti-parallel
Strand 3
B
155 160anti-parallel
Strand 4
B
221 225anti-parallel
Strand 5
B
190 195parallel
Strand 6
B
267 277parallel
Strand 7
B
308 312parallel
Strand 8
B
399 405parallel
Strand 9
B
500 505parallel
Strand 10
B
601 605parallel
Strand 11
B
610 613anti-parallel
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