Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OJN entry

There is 1 chain in PDB entry 5OJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 30GLN 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5OJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 52Right-handed alpha
Helix 2
AA2
A
62 69Right-handed 310
Helix 3
AA3
A
79 84Right-handed alpha
Helix 4
AA4
A
90 97Right-handed alpha
Helix 5
AA5
A
97 116Right-handed alpha
Helix 6
AA6
A
121 133Right-handed alpha
Helix 7
AA7
A
146 152Right-handed alpha
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
189 192Right-handed 310
Helix 10
AB1
A
207 212Right-handed alpha
Helix 11
AB2
A
238 250Right-handed alpha
Helix 12
AB3
A
264 277Right-handed alpha
Helix 13
AB4
A
291 295Right-handed 310
Helix 14
AB5
A
302 307Right-handed alpha
Helix 15
AB6
A
308 310Right-handed 310
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There are 2 sheets in PDB entry 5OJN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
136 141parallel
Strand 3
A
56 60parallel
Strand 4
A
254 258parallel
Strand 5
A
281 284parallel
Strand 6
A
297 299parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
161 168anti-parallel
Strand 3
A
226 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il