Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OJO entry

There are 4 chains in PDB entry 5OJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34GLU 298
B
 SER 34GLU 298
C
 VAL 2LEU 3
C
 GLU 5VAL 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5OJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 46Right-handed alpha
Helix 2
AA2
A
54 61Right-handed alpha
Helix 3
AA3
A
77 82Right-handed alpha
Helix 4
AA4
A
83 90Right-handed alpha
Helix 5
AA5
A
90 105Right-handed alpha
Helix 6
AA6
A
111 127Right-handed alpha
Helix 7
AA7
A
140 145Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
196 200Right-handed 310
Helix 10
AB1
A
224 238Right-handed alpha
Helix 11
AB2
A
252 255Right-handed 310
Helix 12
AB3
A
256 263Right-handed alpha
Helix 13
AB4
A
288 298Right-handed alpha
Helix 14
AB5
B
35 46Right-handed alpha
Helix 15
AB6
B
54 61Right-handed alpha
Helix 16
AB7
B
77 82Right-handed alpha
Helix 17
AB8
B
83 90Right-handed alpha
Helix 18
AB9
B
90 105Right-handed alpha
Helix 19
AC1
B
111 127Right-handed alpha
Helix 20
AC2
B
140 145Right-handed alpha
Helix 21
AC3
B
177 181Right-handed 310
Helix 22
AC4
B
196 200Right-handed 310
Helix 23
AC5
B
224 238Right-handed alpha
Helix 24
AC6
B
252 255Right-handed 310
Helix 25
AC7
B
256 263Right-handed alpha
Helix 26
AC8
B
276 280Right-handed 310
Helix 27
AC9
B
288 298Right-handed alpha
Helix 28
AD1
C
3 8Right-handed 310
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There are 4 sheets in PDB entry 5OJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
130 135parallel
Strand 3
A
48 53parallel
Strand 4
A
240 244parallel
Strand 5
A
267 271parallel
Strand 6
A
283 286parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
212 216anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
130 135parallel
Strand 3
B
48 53parallel
Strand 4
B
240 244parallel
Strand 5
B
267 271parallel
Strand 6
B
283 286parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
212 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il