Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OJR entry

There are 6 chains in PDB entry 5OJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 31	ASP 341
B	HIS 30	THR 340
C	SER 38	THR 340
D	SER 38	THR 340
E	ASN 335	ALA 352
F	ASN 335	VAL 351

There are 5 helices in PDB entry 5OJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	306	311	Right-handed 310
Helix 2	AA2	B	306	311	Right-handed 310
Helix 3	AA3	C	306	311	Right-handed 310
Helix 4	AA4	D	306	311	Right-handed 310
Helix 5	AA5	F	346	349	Right-handed 310

There are 30 sheets in PDB entry 5OJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	334	338	anti-parallel
Strand 3	A	325	329	anti-parallel
Strand 4	A	317	322	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	69	73	anti-parallel
Strand 3	A	77	81	anti-parallel
Strand 4	A	89	90	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	108	first strand
Strand 2	A	111	117	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	131	133	anti-parallel
Strand 5	E	349	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	151	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	164	167	anti-parallel
Strand 4	A	173	176	anti-parallel
Strand 5	E	342	344	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	E	336	338	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	196	200	anti-parallel
Strand 3	A	205	209	anti-parallel
Strand 4	A	217	220	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	232	first strand
Strand 2	A	238	242	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	254	258	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	292	295	anti-parallel
Strand 4	A	303	304	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	334	338	anti-parallel
Strand 3	B	325	329	anti-parallel
Strand 4	B	317	322	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	89	90	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	108	first strand
Strand 2	B	111	117	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	132	133	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	151	first strand
Strand 2	B	154	159	anti-parallel
Strand 3	B	164	167	anti-parallel
Strand 4	B	173	176	anti-parallel
Strand 5	F	342	344	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	F	336	338	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	196	200	anti-parallel
Strand 3	B	205	209	anti-parallel
Strand 4	B	217	220	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	238	242	anti-parallel
Strand 3	B	246	251	anti-parallel
Strand 4	B	254	258	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	292	295	anti-parallel
Strand 4	B	303	304	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	334	338	anti-parallel
Strand 3	C	325	329	anti-parallel
Strand 4	C	317	322	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	77	81	anti-parallel
Strand 4	C	89	90	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	108	first strand
Strand 2	C	111	117	anti-parallel
Strand 3	C	120	124	anti-parallel
Strand 4	C	132	133	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	151	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	164	167	anti-parallel
Strand 4	C	175	178	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	196	200	anti-parallel
Strand 3	C	205	209	anti-parallel
Strand 4	C	217	220	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	232	first strand
Strand 2	C	238	242	anti-parallel
Strand 3	C	246	251	anti-parallel
Strand 4	C	254	258	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	277	first strand
Strand 2	C	283	287	anti-parallel
Strand 3	C	292	295	anti-parallel
Strand 4	C	303	304	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	334	338	anti-parallel
Strand 3	D	325	329	anti-parallel
Strand 4	D	317	322	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	73	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	89	90	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	108	first strand
Strand 2	D	111	117	anti-parallel
Strand 3	D	120	124	anti-parallel
Strand 4	D	132	133	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	151	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	164	167	anti-parallel
Strand 4	D	175	178	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	190	first strand
Strand 2	D	196	200	anti-parallel
Strand 3	D	205	209	anti-parallel
Strand 4	D	217	220	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	232	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	246	251	anti-parallel
Strand 4	D	254	258	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	277	first strand
Strand 2	D	283	287	anti-parallel
Strand 3	D	292	295	anti-parallel
Strand 4	D	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJR