Analysis of interatomic Contacts of Structural Units in PDB entry:
5OJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OJS entry

There is 1 chain in PDB entry 5OJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 MET 1PHE 3744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are194 helices in PDB entry 5OJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
T
3 8Right-handed alpha
Helix 2
AA2
T
9 14Right-handed 310
Helix 3
AA3
T
19 26Right-handed 310
Helix 4
AA4
T
29 34Right-handed alpha
Helix 5
AA5
T
43 59Right-handed alpha
Helix 6
AA6
T
73 84Right-handed alpha
Helix 7
AA7
T
92 100Right-handed alpha
Helix 8
AA8
T
116 131Right-handed alpha
Helix 9
AA9
T
141 158Right-handed alpha
Helix 10
AB1
T
217 221Right-handed 310
Helix 11
AB2
T
231 240Right-handed alpha
Helix 12
AB3
T
248 254Right-handed alpha
Helix 13
AB4
T
292 309Right-handed alpha
Helix 14
AB5
T
324 335Right-handed alpha
Helix 15
AB6
T
341 357Right-handed alpha
Helix 16
AB7
T
362 368Right-handed alpha
Helix 17
AB8
T
374 379Right-handed 310
Helix 18
AB9
T
387 403Right-handed alpha
Helix 19
AC1
T
407 424Right-handed alpha
Helix 20
AC2
T
429 442Right-handed alpha
Helix 21
AC3
T
442 453Right-handed alpha
Helix 22
AC4
T
454 456Right-handed 310
Helix 23
AC5
T
457 497Right-handed alpha
Helix 24
AC6
T
501 506Right-handed 310
Helix 25
AC7
T
511 522Right-handed alpha
Helix 26
AC8
T
563 567Right-handed 310
Helix 27
AC9
T
578 601Right-handed alpha
Helix 28
AD1
T
602 605Right-handed 310
Helix 29
AD2
T
607 612Right-handed alpha
Helix 30
AD3
T
615 619Right-handed 310
Helix 31
AD4
T
627 643Right-handed alpha
Helix 32
AD5
T
644 648Right-handed 310
Helix 33
AD6
T
677 690Right-handed alpha
Helix 34
AD7
T
698 714Right-handed alpha
Helix 35
AD8
T
719 728Right-handed alpha
Helix 36
AD9
T
732 747Right-handed alpha
Helix 37
AE1
T
755 771Right-handed alpha
Helix 38
AE2
T
780 784Right-handed 310
Helix 39
AE3
T
788 801Right-handed alpha
Helix 40
AE4
T
805 817Right-handed alpha
Helix 41
AE5
T
823 827Right-handed 310
Helix 42
AE6
T
831 841Right-handed alpha
Helix 43
AE7
T
855 864Right-handed alpha
Helix 44
AE8
T
879 890Right-handed alpha
Helix 45
AE9
T
893 903Right-handed alpha
Helix 46
AF1
T
917 919Right-handed 310
Helix 47
AF2
T
920 932Right-handed alpha
Helix 48
AF3
T
940 952Right-handed alpha
Helix 49
AF4
T
998 1006Right-handed alpha
Helix 50
AF5
T
1010 1029Right-handed alpha
Helix 51
AF6
T
1030 1033Right-handed 310
Helix 52
AF7
T
1041 1048Right-handed alpha
Helix 53
AF8
T
1068 1090Right-handed alpha
Helix 54
AF9
T
1095 1110Right-handed alpha
Helix 55
AG1
T
1112 1121Right-handed alpha
Helix 56
AG2
T
1144 1148Right-handed 310
Helix 57
AG3
T
1159 1179Right-handed alpha
Helix 58
AG4
T
1183 1188Right-handed alpha
Helix 59
AG5
T
1188 1200Right-handed alpha
Helix 60
AG6
T
1201 1203Right-handed 310
Helix 61
AG7
T
1206 1221Right-handed alpha
Helix 62
AG8
T
1228 1233Right-handed alpha
Helix 63
AG9
T
1233 1247Right-handed alpha
Helix 64
AH1
T
1260 1271Right-handed alpha
Helix 65
AH2
T
1283 1294Right-handed alpha
Helix 66
AH3
T
1301 1314Right-handed alpha
Helix 67
AH4
T
1334 1340Right-handed alpha
Helix 68
AH5
T
1346 1355Right-handed alpha
Helix 69
AH6
T
1355 1362Right-handed alpha
Helix 70
AH7
T
1372 1384Right-handed alpha
Helix 71
AH8
T
1403 1425Right-handed alpha
Helix 72
AH9
T
1436 1447Right-handed alpha
Helix 73
AI1
T
1448 1450Right-handed 310
Helix 74
AI2
T
1452 1467Right-handed alpha
Helix 75
AI3
T
1476 1481Right-handed alpha
Helix 76
AI4
T
1482 1488Right-handed alpha
Helix 77
AI5
T
1497 1507Right-handed alpha
Helix 78
AI6
T
1517 1529Right-handed alpha
Helix 79
AI7
T
1531 1537Right-handed alpha
Helix 80
AI8
T
1546 1557Right-handed alpha
Helix 81
AI9
T
1570 1584Right-handed alpha
Helix 82
AJ1
T
1593 1601Right-handed alpha
Helix 83
AJ2
T
1604 1614Right-handed alpha
Helix 84
AJ3
T
1617 1629Right-handed alpha
Helix 85
AJ4
T
1639 1642Right-handed 310
Helix 86
AJ5
T
1643 1654Right-handed alpha
Helix 87
AJ6
T
1662 1679Right-handed alpha
Helix 88
AJ7
T
1692 1709Right-handed alpha
Helix 89
AJ8
T
1715 1734Right-handed alpha
Helix 90
AJ9
T
1741 1750Right-handed alpha
Helix 91
AK1
T
1762 1769Right-handed alpha
Helix 92
AK2
T
1778 1791Right-handed alpha
Helix 93
AK3
T
1796 1817Right-handed alpha
Helix 94
AK4
T
1833 1842Right-handed alpha
Helix 95
AK5
T
1858 1875Right-handed alpha
Helix 96
AK6
T
1879 1891Right-handed alpha
Helix 97
AK7
T
1892 1896Right-handed 310
Helix 98
AK8
T
1901 1913Right-handed alpha
Helix 99
AK9
T
1922 1929Right-handed alpha
Helix 100
AL1
T
1938 1956Right-handed alpha
Helix 101
AL2
T
1964 1977Right-handed alpha
Helix 102
AL3
T
1980 1988Right-handed alpha
Helix 103
AL4
T
1989 1991Right-handed 310
Helix 104
AL5
T
2001 2014Right-handed alpha
Helix 105
AL6
T
2024 2042Right-handed alpha
Helix 106
AL7
T
2090 2107Right-handed alpha
Helix 107
AL8
T
2116 2128Right-handed alpha
Helix 108
AL9
T
2140 2145Right-handed 310
Helix 109
AM1
T
2157 2174Right-handed alpha
Helix 110
AM2
T
2183 2192Right-handed alpha
Helix 111
AM3
T
2196 2200Right-handed 310
Helix 112
AM4
T
2203 2218Right-handed alpha
Helix 113
AM5
T
2229 2244Right-handed alpha
Helix 114
AM6
T
2249 2252Right-handed 310
Helix 115
AM7
T
2253 2265Right-handed alpha
Helix 116
AM8
T
2275 2287Right-handed alpha
Helix 117
AM9
T
2289 2294Right-handed alpha
Helix 118
AN1
T
2302 2321Right-handed alpha
Helix 119
AN2
T
2328 2342Right-handed alpha
Helix 120
AN3
T
2346 2361Right-handed alpha
Helix 121
AN4
T
2368 2377Right-handed alpha
Helix 122
AN5
T
2380 2386Right-handed alpha
Helix 123
AN6
T
2390 2404Right-handed alpha
Helix 124
AN7
T
2428 2441Right-handed alpha
Helix 125
AN8
T
2447 2456Right-handed alpha
Helix 126
AN9
T
2468 2478Right-handed alpha
Helix 127
AO1
T
2498 2502Right-handed 310
Helix 128
AO2
T
2518 2534Right-handed alpha
Helix 129
AO3
T
2537 2543Right-handed alpha
Helix 130
AO4
T
2545 2550Right-handed alpha
Helix 131
AO5
T
2554 2568Right-handed alpha
Helix 132
AO6
T
2569 2571Right-handed 310
Helix 133
AO7
T
2575 2588Right-handed alpha
Helix 134
AO8
T
2604 2612Right-handed alpha
Helix 135
AO9
T
2622 2627Right-handed alpha
Helix 136
AP1
T
2636 2642Right-handed alpha
Helix 137
AP2
T
2643 2646Right-handed 310
Helix 138
AP3
T
2651 2670Right-handed alpha
Helix 139
AP4
T
2672 2681Right-handed alpha
Helix 140
AP5
T
2685 2696Right-handed alpha
Helix 141
AP6
T
2699 2714Right-handed alpha
Helix 142
AP7
T
2720 2723Right-handed 310
Helix 143
AP8
T
2724 2741Right-handed alpha
Helix 144
AP9
T
2744 2747Right-handed 310
Helix 145
AQ1
T
2748 2753Right-handed alpha
Helix 146
AQ2
T
2754 2759Right-handed alpha
Helix 147
AQ3
T
2776 2781Right-handed alpha
Helix 148
AQ4
T
2788 2806Right-handed alpha
Helix 149
AQ5
T
2812 2816Right-handed 310
Helix 150
AQ6
T
2817 2831Right-handed alpha
Helix 151
AQ7
T
2837 2859Right-handed alpha
Helix 152
AQ8
T
2859 2864Right-handed alpha
Helix 153
AQ9
T
2875 2883Right-handed alpha
Helix 154
AR1
T
2884 2886Right-handed 310
Helix 155
AR2
T
2894 2915Right-handed alpha
Helix 156
AR3
T
2943 2957Right-handed alpha
Helix 157
AR4
T
2959 2966Right-handed alpha
Helix 158
AR5
T
2979 2991Right-handed alpha
Helix 159
AR6
T
2992 2994Right-handed 310
Helix 160
AR7
T
2995 3001Right-handed 310
Helix 161
AR8
T
3015 3018Right-handed 310
Helix 162
AR9
T
3019 3033Right-handed alpha
Helix 163
AS1
T
3037 3051Right-handed alpha
Helix 164
AS2
T
3054 3069Right-handed alpha
Helix 165
AS3
T
3075 3077Right-handed 310
Helix 166
AS4
T
3078 3087Right-handed alpha
Helix 167
AS5
T
3097 3108Right-handed alpha
Helix 168
AS6
T
3115 3123Right-handed alpha
Helix 169
AS7
T
3133 3135Right-handed 310
Helix 170
AS8
T
3136 3142Right-handed alpha
Helix 171
AS9
T
3151 3162Right-handed alpha
Helix 172
AT1
T
3164 3182Right-handed alpha
Helix 173
AT2
T
3203 3218Right-handed alpha
Helix 174
AT3
T
3219 3237Right-handed alpha
Helix 175
AT4
T
3242 3261Right-handed alpha
Helix 176
AT5
T
3273 3283Right-handed alpha
Helix 177
AT6
T
3284 3287Right-handed 310
Helix 178
AT7
T
3292 3298Right-handed alpha
Helix 179
AT8
T
3308 3325Right-handed alpha
Helix 180
AT9
T
3333 3338Right-handed alpha
Helix 181
AU1
T
3412 3423Right-handed alpha
Helix 182
AU2
T
3426 3433Right-handed alpha
Helix 183
AU3
T
3467 3478Right-handed alpha
Helix 184
AU4
T
3482 3496Right-handed alpha
Helix 185
AU5
T
3506 3521Right-handed alpha
Helix 186
AU6
T
3525 3532Right-handed alpha
Helix 187
AU7
T
3538 3561Right-handed alpha
Helix 188
AU8
T
3625 3633Right-handed alpha
Helix 189
AU9
T
3635 3640Right-handed alpha
Helix 190
AV1
T
3640 3653Right-handed alpha
Helix 191
AV2
T
3657 3678Right-handed alpha
Helix 192
AV3
T
3686 3703Right-handed alpha
Helix 193
AV4
T
3717 3728Right-handed alpha
Helix 194
AV5
T
3729 3735Right-handed alpha
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There are 4 sheets in PDB entry 5OJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3331 3332first strand
Strand 2
T
3378 3379anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3371 3374first strand
Strand 2
T
3387 3395anti-parallel
Strand 3
T
3381 3382anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3371 3374first strand
Strand 2
T
3387 3395anti-parallel
Strand 3
T
3400 3406anti-parallel
Strand 4
T
3456 3458anti-parallel
Strand 5
T
3449 3450anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3572 3574first strand
Strand 2
T
3581 3583anti-parallel
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