Analysis of interatomic Contacts of Structural Units in PDB entry:
5OK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OK4 entry

There is 1 chain in PDB entry 5OK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5OK4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
34 40Right-handed 310
Helix 4
AA4
A
41 54Right-handed alpha
Helix 5
AA5
A
64 68Right-handed 310
Helix 6
AA6
A
77 88Right-handed alpha
Helix 7
AA7
A
89 91Right-handed 310
Helix 8
AA8
A
92 107Right-handed alpha
Helix 9
AA9
A
119 124Right-handed 310
Helix 10
AB1
A
130 136Right-handed alpha
Helix 11
AB2
A
147 149Right-handed 310
Helix 12
AB3
A
150 156Right-handed alpha
Helix 13
AB4
A
157 162Right-handed 310
Helix 14
AB5
A
175 184Right-handed alpha
Helix 15
AB6
A
222 238Right-handed alpha
Helix 16
AB7
A
246 252Right-handed 310
Helix 17
AB8
A
255 276Right-handed alpha
Helix 18
AB9
A
280 303Right-handed alpha
Helix 19
AC1
A
304 310Right-handed 310
Helix 20
AC2
A
312 315Right-handed 310
Helix 21
AC3
A
316 321Right-handed alpha
Helix 22
AC4
A
322 324Right-handed 310
Helix 23
AC5
A
325 326Right-handed 310
Helix 24
AC6
A
327 343Right-handed alpha
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There are 3 sheets in PDB entry 5OK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 128first strand
Strand 2
A
58 62parallel
Strand 3
A
2 6parallel
Strand 4
A
140 143parallel
Strand 5
A
167 169parallel
Strand 6
A
198 200parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 72first strand
Strand 2
A
113 116parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 218first strand
Strand 2
A
241 244parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il