Analysis of interatomic Contacts of Structural Units in PDB entry:
5OK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OK9 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5OK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -1ALA 239
A
 ALA 241LEU 243
B
 GLY -2ALA 239
B
 ALA 241LEU 243
E
 PRO -1PRO 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 5OK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 16Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
79 106Right-handed alpha
Helix 5
AA5
A
113 135Right-handed alpha
Helix 6
AA6
A
139 162Right-handed alpha
Helix 7
AA7
A
166 183Right-handed alpha
Helix 8
AA8
A
186 204Right-handed alpha
Helix 9
AA9
A
205 208Right-handed 310
Helix 10
AB1
A
212 232Right-handed alpha
Helix 11
AB2
B
-1 16Right-handed alpha
Helix 12
AB3
B
18 31Right-handed alpha
Helix 13
AB4
B
37 69Right-handed alpha
Helix 14
AB5
B
79 106Right-handed alpha
Helix 15
AB6
B
113 135Right-handed alpha
Helix 16
AB7
B
139 162Right-handed alpha
Helix 17
AB8
B
166 183Right-handed alpha
Helix 18
AB9
B
186 204Right-handed alpha
Helix 19
AC1
B
205 208Right-handed 310
Helix 20
AC2
B
209 232Right-handed alpha
Helix 21
AC3
B
233 236Right-handed 310
Helix 22
AC4
E
2 16Right-handed alpha
Helix 23
AC5
E
18 31Right-handed alpha
Helix 24
AC6
E
37 70Right-handed alpha
Helix 25
AC7
E
79 106Right-handed alpha
Helix 26
AC8
E
113 135Right-handed alpha
Helix 27
AC9
E
139 162Right-handed alpha
Helix 28
AD1
E
166 183Right-handed alpha
Helix 29
AD2
E
186 204Right-handed alpha
Helix 30
AD3
E
205 208Right-handed 310
Helix 31
AD4
E
209 231Right-handed alpha
Helix 32
AD5
F
2 16Right-handed alpha
Helix 33
AD6
F
18 31Right-handed alpha
Helix 34
AD7
F
37 69Right-handed alpha
Helix 35
AD8
F
79 106Right-handed alpha
Helix 36
AD9
F
106 111Right-handed alpha
Helix 37
AE1
F
113 135Right-handed alpha
Helix 38
AE2
F
137 162Right-handed alpha
Helix 39
AE3
F
166 183Right-handed alpha
Helix 40
AE4
F
186 203Right-handed alpha
Helix 41
AE5
F
204 208Right-handed 310
Helix 42
AE6
F
209 232Right-handed alpha
Helix 43
AE7
F
233 236Right-handed 310
Back to top of page
There are no sheets in PDB entry 5OK9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il