Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OKC entry

There are 6 chains in PDB entry 5OKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	SER 379
B	SER 2	ARG 380
F	PRO 2	MSE 133
G	VAL 137	GLU 162
H	PRO 2	MSE 133
I	THR 136	GLU 162

There are 38 helices in PDB entry 5OKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	29	Right-handed alpha
Helix 2	AA2	A	130	137	Right-handed alpha
Helix 3	AA3	A	146	153	Right-handed alpha
Helix 4	AA4	A	157	168	Right-handed alpha
Helix 5	AA5	A	181	199	Right-handed alpha
Helix 6	AA6	A	207	216	Right-handed alpha
Helix 7	AA7	A	220	224	Right-handed 310
Helix 8	AA8	A	227	238	Right-handed alpha
Helix 9	AA9	A	253	270	Right-handed alpha
Helix 10	AB1	A	277	288	Right-handed alpha
Helix 11	AB2	A	297	302	Right-handed 310
Helix 12	AB3	A	317	321	Right-handed 310
Helix 13	AB4	A	324	336	Right-handed alpha
Helix 14	AB5	A	341	349	Right-handed alpha
Helix 15	AB6	A	350	352	Right-handed 310
Helix 16	AB7	A	357	366	Right-handed alpha
Helix 17	AB8	B	21	29	Right-handed alpha
Helix 18	AB9	B	131	137	Right-handed alpha
Helix 19	AC1	B	146	153	Right-handed alpha
Helix 20	AC2	B	157	168	Right-handed alpha
Helix 21	AC3	B	181	199	Right-handed alpha
Helix 22	AC4	B	207	216	Right-handed alpha
Helix 23	AC5	B	220	224	Right-handed 310
Helix 24	AC6	B	227	238	Right-handed alpha
Helix 25	AC7	B	253	270	Right-handed alpha
Helix 26	AC8	B	277	288	Right-handed alpha
Helix 27	AC9	B	297	302	Right-handed 310
Helix 28	AD1	B	317	321	Right-handed 310
Helix 29	AD2	B	324	336	Right-handed alpha
Helix 30	AD3	B	340	349	Right-handed alpha
Helix 31	AD4	B	350	352	Right-handed 310
Helix 32	AD5	B	357	365	Right-handed alpha
Helix 33	AD6	F	8	18	Right-handed alpha
Helix 34	AD7	F	44	51	Right-handed alpha
Helix 35	AD8	G	156	161	Right-handed alpha
Helix 36	AD9	H	8	17	Right-handed alpha
Helix 37	AE1	H	44	52	Right-handed alpha
Helix 38	AE2	I	156	161	Right-handed alpha

There are 15 sheets in PDB entry 5OKC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	98	100	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	49	52	anti-parallel
Strand 3	A	57	64	anti-parallel
Strand 4	A	106	113	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	176	180	parallel
Strand 3	A	170	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	250	252	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	98	100	parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	49	52	anti-parallel
Strand 3	B	57	64	anti-parallel
Strand 4	B	106	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	176	180	parallel
Strand 3	B	170	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	250	252	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	370	first strand
Strand 2	B	375	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	76	first strand
Strand 2	F	79	84	anti-parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	121	124	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	76	first strand
Strand 2	H	79	84	anti-parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	121	124	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKC