Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OKJ entry

There are 2 chains in PDB entry 5OKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5LEU 478
B
 HIS 5LEU 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5OKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
36 43Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
59 75Right-handed alpha
Helix 5
AA5
A
84 89Right-handed alpha
Helix 6
AA6
A
97 114Right-handed alpha
Helix 7
AA7
A
128 136Right-handed alpha
Helix 8
AA8
A
137 140Right-handed 310
Helix 9
AA9
A
141 159Right-handed alpha
Helix 10
AB1
A
170 180Right-handed alpha
Helix 11
AB2
A
190 216Right-handed alpha
Helix 12
AB3
A
236 251Right-handed alpha
Helix 13
AB4
A
251 261Right-handed alpha
Helix 14
AB5
A
264 274Right-handed alpha
Helix 15
AB6
A
283 290Right-handed alpha
Helix 16
AB7
A
355 371Right-handed alpha
Helix 17
AB8
A
395 416Right-handed alpha
Helix 18
AB9
A
461 473Right-handed alpha
Helix 19
AC1
B
20 25Right-handed alpha
Helix 20
AC2
B
36 44Right-handed alpha
Helix 21
AC3
B
48 52Right-handed 310
Helix 22
AC4
B
59 75Right-handed alpha
Helix 23
AC5
B
84 89Right-handed alpha
Helix 24
AC6
B
97 114Right-handed alpha
Helix 25
AC7
B
128 136Right-handed alpha
Helix 26
AC8
B
137 140Right-handed 310
Helix 27
AC9
B
141 159Right-handed alpha
Helix 28
AD1
B
170 180Right-handed alpha
Helix 29
AD2
B
190 216Right-handed alpha
Helix 30
AD3
B
236 251Right-handed alpha
Helix 31
AD4
B
251 261Right-handed alpha
Helix 32
AD5
B
264 274Right-handed alpha
Helix 33
AD6
B
283 290Right-handed alpha
Helix 34
AD7
B
355 371Right-handed alpha
Helix 35
AD8
B
395 416Right-handed alpha
Helix 36
AD9
B
461 473Right-handed alpha
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There are 7 sheets in PDB entry 5OKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
78 82parallel
Strand 3
A
117 123parallel
Strand 4
A
164 169parallel
Strand 5
A
220 226parallel
Strand 6
A
296 299parallel
Strand 7
A
374 379parallel
Strand 8
A
419 425parallel
Strand 9
A
14 18parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
304 307parallel
Strand 3
A
337 340anti-parallel
Strand 4
A
332 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
458 460anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
78 82parallel
Strand 3
B
117 123parallel
Strand 4
B
164 169parallel
Strand 5
B
220 226parallel
Strand 6
B
296 299parallel
Strand 7
B
374 379parallel
Strand 8
B
419 425parallel
Strand 9
B
14 18parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
304 307parallel
Strand 3
B
337 340anti-parallel
Strand 4
B
332 333anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 347first strand
Strand 2
B
353 354anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 446first strand
Strand 2
B
458 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il