Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OKL entry

There are 2 chains in PDB entry 5OKL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 11GLN 586
B
 PHE 11GLN 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 5OKL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
38 58Right-handed alpha
Helix 4
AA4
A
63 67Right-handed 310
Helix 5
AA5
A
68 79Right-handed alpha
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
A
89 94Right-handed alpha
Helix 8
AA8
A
96 108Right-handed alpha
Helix 9
AA9
A
136 149Right-handed alpha
Helix 10
AB1
A
153 170Right-handed alpha
Helix 11
AB2
A
177 183Right-handed alpha
Helix 12
AB3
A
185 210Right-handed alpha
Helix 13
AB4
A
210 226Right-handed alpha
Helix 14
AB5
A
230 251Right-handed alpha
Helix 15
AB6
A
252 270Right-handed alpha
Helix 16
AB7
A
271 274Right-handed 310
Helix 17
AB8
A
278 283Right-handed alpha
Helix 18
AB9
A
287 296Right-handed alpha
Helix 19
AC1
A
309 313Right-handed 310
Helix 20
AC2
A
317 325Right-handed alpha
Helix 21
AC3
A
325 340Right-handed alpha
Helix 22
AC4
A
345 364Right-handed alpha
Helix 23
AC5
A
368 374Right-handed alpha
Helix 24
AC6
A
375 418Right-handed alpha
Helix 25
AC7
A
422 441Right-handed alpha
Helix 26
AC8
A
445 463Right-handed alpha
Helix 27
AC9
A
471 481Right-handed alpha
Helix 28
AD1
A
484 491Right-handed alpha
Helix 29
AD2
A
506 509Right-handed 310
Helix 30
AD3
A
511 515Right-handed 310
Helix 31
AD4
A
519 537Right-handed alpha
Helix 32
AD5
A
541 560Right-handed alpha
Helix 33
AD6
A
564 573Right-handed alpha
Helix 34
AD7
B
12 21Right-handed alpha
Helix 35
AD8
B
21 34Right-handed alpha
Helix 36
AD9
B
38 58Right-handed alpha
Helix 37
AE1
B
63 67Right-handed 310
Helix 38
AE2
B
68 79Right-handed alpha
Helix 39
AE3
B
82 87Right-handed alpha
Helix 40
AE4
B
89 94Right-handed alpha
Helix 41
AE5
B
96 108Right-handed alpha
Helix 42
AE6
B
135 149Right-handed alpha
Helix 43
AE7
B
153 169Right-handed alpha
Helix 44
AE8
B
185 210Right-handed alpha
Helix 45
AE9
B
210 226Right-handed alpha
Helix 46
AF1
B
230 251Right-handed alpha
Helix 47
AF2
B
252 270Right-handed alpha
Helix 48
AF3
B
271 274Right-handed 310
Helix 49
AF4
B
278 283Right-handed alpha
Helix 50
AF5
B
287 296Right-handed alpha
Helix 51
AF6
B
309 313Right-handed 310
Helix 52
AF7
B
317 325Right-handed alpha
Helix 53
AF8
B
325 340Right-handed alpha
Helix 54
AF9
B
345 364Right-handed alpha
Helix 55
AG1
B
368 374Right-handed alpha
Helix 56
AG2
B
375 418Right-handed alpha
Helix 57
AG3
B
422 441Right-handed alpha
Helix 58
AG4
B
445 463Right-handed alpha
Helix 59
AG5
B
471 481Right-handed alpha
Helix 60
AG6
B
484 491Right-handed alpha
Helix 61
AG7
B
506 509Right-handed 310
Helix 62
AG8
B
511 515Right-handed 310
Helix 63
AG9
B
520 537Right-handed alpha
Helix 64
AH1
B
541 560Right-handed alpha
Helix 65
AH2
B
564 573Right-handed alpha
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There are 2 sheets in PDB entry 5OKL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
584 585anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 504first strand
Strand 2
B
584 585anti-parallel
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