Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OKM entry

There are 3 chains in PDB entry 5OKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 420	PRO 875
B	GLU 420	VAL 874
C	GLU 420	TRP 798

There are 78 helices in PDB entry 5OKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	442	447	Right-handed alpha
Helix 2	AA2	A	477	494	Right-handed alpha
Helix 3	AA3	A	516	520	Right-handed 310
Helix 4	AA4	A	568	583	Right-handed alpha
Helix 5	AA5	A	587	593	Right-handed 310
Helix 6	AA6	A	615	625	Right-handed alpha
Helix 7	AA7	A	628	633	Right-handed alpha
Helix 8	AA8	A	635	643	Right-handed alpha
Helix 9	AA9	A	801	803	Right-handed 310
Helix 10	AB1	A	812	818	Right-handed alpha
Helix 11	AB2	B	442	447	Right-handed alpha
Helix 12	AB3	B	477	494	Right-handed alpha
Helix 13	AB4	B	516	520	Right-handed 310
Helix 14	AB5	B	568	583	Right-handed alpha
Helix 15	AB6	B	594	599	Right-handed alpha
Helix 16	AB7	B	615	625	Right-handed alpha
Helix 17	AB8	B	628	633	Right-handed alpha
Helix 18	AB9	B	635	643	Right-handed alpha
Helix 19	AC1	B	801	803	Right-handed 310
Helix 20	AC2	B	812	818	Right-handed alpha
Helix 21	AC3	C	442	447	Right-handed alpha
Helix 22	AC4	C	477	494	Right-handed alpha
Helix 23	AC5	C	516	520	Right-handed 310
Helix 24	AC6	C	568	583	Right-handed alpha
Helix 25	AC7	C	594	599	Right-handed alpha
Helix 26	AC8	C	615	625	Right-handed alpha
Helix 27	AC9	C	628	633	Right-handed alpha
Helix 28	AD1	C	635	643	Right-handed alpha
Helix 29	AD2	C	812	818	Right-handed alpha
Helix 30	AD3	D	442	447	Right-handed alpha
Helix 31	AD4	D	477	494	Right-handed alpha
Helix 32	AD5	D	516	520	Right-handed 310
Helix 33	AD6	D	568	583	Right-handed alpha
Helix 34	AD7	D	615	626	Right-handed alpha
Helix 35	AD8	D	627	633	Right-handed alpha
Helix 36	AD9	D	635	643	Right-handed alpha
Helix 37	AE1	D	801	803	Right-handed 310
Helix 38	AE2	D	812	818	Right-handed alpha
Helix 39	AE3	E	442	447	Right-handed alpha
Helix 40	AE4	E	477	494	Right-handed alpha
Helix 41	AE5	E	516	520	Right-handed 310
Helix 42	AE6	E	568	583	Right-handed alpha
Helix 43	AE7	E	587	591	Right-handed 310
Helix 44	AE8	E	594	599	Right-handed alpha
Helix 45	AE9	E	615	625	Right-handed alpha
Helix 46	AF1	E	628	633	Right-handed alpha
Helix 47	AF2	E	635	643	Right-handed alpha
Helix 48	AF3	E	801	803	Right-handed 310
Helix 49	AF4	E	812	818	Right-handed alpha
Helix 50	AF5	F	442	447	Right-handed alpha
Helix 51	AF6	F	477	494	Right-handed alpha
Helix 52	AF7	F	516	520	Right-handed 310
Helix 53	AF8	F	568	583	Right-handed alpha
Helix 54	AF9	F	594	599	Right-handed alpha
Helix 55	AG1	F	615	625	Right-handed alpha
Helix 56	AG2	F	628	633	Right-handed alpha
Helix 57	AG3	F	635	643	Right-handed alpha
Helix 58	AG4	F	801	803	Right-handed 310
Helix 59	AG5	F	813	818	Right-handed alpha
Helix 60	AG6	G	442	447	Right-handed alpha
Helix 61	AG7	G	477	494	Right-handed alpha
Helix 62	AG8	G	516	520	Right-handed 310
Helix 63	AG9	G	568	583	Right-handed alpha
Helix 64	AH1	G	594	598	Right-handed 310
Helix 65	AH2	G	615	625	Right-handed alpha
Helix 66	AH3	G	628	633	Right-handed alpha
Helix 67	AH4	G	635	643	Right-handed alpha
Helix 68	AH5	G	801	803	Right-handed 310
Helix 69	AH6	G	815	818	Right-handed 310
Helix 70	AH7	H	442	447	Right-handed alpha
Helix 71	AH8	H	477	494	Right-handed alpha
Helix 72	AH9	H	516	520	Right-handed 310
Helix 73	AI1	H	568	583	Right-handed alpha
Helix 74	AI2	H	615	625	Right-handed alpha
Helix 75	AI3	H	628	633	Right-handed alpha
Helix 76	AI4	H	635	643	Right-handed alpha
Helix 77	AI5	H	801	803	Right-handed 310
Helix 78	AI6	H	812	818	Right-handed alpha

There are 32 sheets in PDB entry 5OKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	702	709	anti-parallel
Strand 3	A	721	728	anti-parallel
Strand 4	A	423	432	anti-parallel
Strand 5	A	466	472	parallel
Strand 6	A	508	514	anti-parallel
Strand 7	A	498	505	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	531	first strand
Strand 2	A	542	550	anti-parallel
Strand 3	A	553	561	anti-parallel
Strand 4	A	601	607	parallel
Strand 5	A	690	696	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	787	first strand
Strand 2	A	793	799	anti-parallel
Strand 3	A	747	758	anti-parallel
Strand 4	A	861	873	anti-parallel
Strand 5	A	850	858	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	765	770	anti-parallel
Strand 3	A	820	827	anti-parallel
Strand 4	A	833	840	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	702	709	anti-parallel
Strand 3	B	721	728	anti-parallel
Strand 4	B	423	432	anti-parallel
Strand 5	B	466	472	parallel
Strand 6	B	508	514	anti-parallel
Strand 7	B	498	505	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	531	first strand
Strand 2	B	542	550	anti-parallel
Strand 3	B	553	561	anti-parallel
Strand 4	B	601	607	parallel
Strand 5	B	690	696	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	785	787	first strand
Strand 2	B	793	799	anti-parallel
Strand 3	B	747	758	anti-parallel
Strand 4	B	861	873	anti-parallel
Strand 5	B	850	858	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	779	first strand
Strand 2	B	765	770	anti-parallel
Strand 3	B	820	827	anti-parallel
Strand 4	B	833	840	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	702	709	anti-parallel
Strand 3	C	721	728	anti-parallel
Strand 4	C	423	432	anti-parallel
Strand 5	C	466	472	parallel
Strand 6	C	508	514	anti-parallel
Strand 7	C	498	505	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	531	first strand
Strand 2	C	542	550	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	601	607	parallel
Strand 5	C	690	696	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	785	787	first strand
Strand 2	C	793	799	anti-parallel
Strand 3	C	747	758	anti-parallel
Strand 4	C	861	873	anti-parallel
Strand 5	C	850	858	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	779	first strand
Strand 2	C	765	770	anti-parallel
Strand 3	C	820	827	anti-parallel
Strand 4	C	833	840	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	453	first strand
Strand 2	D	702	709	anti-parallel
Strand 3	D	721	728	anti-parallel
Strand 4	D	423	432	anti-parallel
Strand 5	D	466	472	parallel
Strand 6	D	508	514	anti-parallel
Strand 7	D	498	505	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	522	531	first strand
Strand 2	D	542	550	anti-parallel
Strand 3	D	553	561	anti-parallel
Strand 4	D	601	607	parallel
Strand 5	D	690	696	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	785	787	first strand
Strand 2	D	793	799	anti-parallel
Strand 3	D	747	758	anti-parallel
Strand 4	D	861	873	anti-parallel
Strand 5	D	850	858	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	778	779	first strand
Strand 2	D	765	770	anti-parallel
Strand 3	D	820	827	anti-parallel
Strand 4	D	833	840	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	453	first strand
Strand 2	E	702	709	anti-parallel
Strand 3	E	721	728	anti-parallel
Strand 4	E	423	432	anti-parallel
Strand 5	E	466	472	parallel
Strand 6	E	508	514	anti-parallel
Strand 7	E	498	505	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	522	531	first strand
Strand 2	E	542	550	anti-parallel
Strand 3	E	553	561	anti-parallel
Strand 4	E	601	607	parallel
Strand 5	E	690	696	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	785	790	first strand
Strand 2	E	793	799	anti-parallel
Strand 3	E	747	758	anti-parallel
Strand 4	E	861	873	anti-parallel
Strand 5	E	850	858	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	778	779	first strand
Strand 2	E	765	770	anti-parallel
Strand 3	E	820	827	anti-parallel
Strand 4	E	833	840	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	451	453	first strand
Strand 2	F	702	709	anti-parallel
Strand 3	F	721	728	anti-parallel
Strand 4	F	423	432	anti-parallel
Strand 5	F	466	472	parallel
Strand 6	F	508	514	anti-parallel
Strand 7	F	498	505	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	522	531	first strand
Strand 2	F	542	550	anti-parallel
Strand 3	F	553	561	anti-parallel
Strand 4	F	601	607	parallel
Strand 5	F	690	696	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	785	787	first strand
Strand 2	F	793	799	anti-parallel
Strand 3	F	747	758	anti-parallel
Strand 4	F	861	873	anti-parallel
Strand 5	F	850	858	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	778	779	first strand
Strand 2	F	765	770	anti-parallel
Strand 3	F	820	827	anti-parallel
Strand 4	F	833	840	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	451	453	first strand
Strand 2	G	702	709	anti-parallel
Strand 3	G	721	728	anti-parallel
Strand 4	G	423	432	anti-parallel
Strand 5	G	466	472	parallel
Strand 6	G	508	514	anti-parallel
Strand 7	G	498	505	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	522	531	first strand
Strand 2	G	542	550	anti-parallel
Strand 3	G	553	561	anti-parallel
Strand 4	G	601	607	parallel
Strand 5	G	690	696	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	785	787	first strand
Strand 2	G	793	799	anti-parallel
Strand 3	G	747	758	anti-parallel
Strand 4	G	861	873	anti-parallel
Strand 5	G	850	858	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	778	779	first strand
Strand 2	G	765	770	anti-parallel
Strand 3	G	820	827	anti-parallel
Strand 4	G	833	840	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	451	453	first strand
Strand 2	H	702	709	anti-parallel
Strand 3	H	721	728	anti-parallel
Strand 4	H	423	432	anti-parallel
Strand 5	H	466	472	parallel
Strand 6	H	508	514	anti-parallel
Strand 7	H	498	505	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	522	531	first strand
Strand 2	H	542	550	anti-parallel
Strand 3	H	553	561	anti-parallel
Strand 4	H	601	607	parallel
Strand 5	H	690	696	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	785	787	first strand
Strand 2	H	793	799	anti-parallel
Strand 3	H	747	758	anti-parallel
Strand 4	H	861	873	anti-parallel
Strand 5	H	850	858	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	778	779	first strand
Strand 2	H	765	770	anti-parallel
Strand 3	H	820	827	anti-parallel
Strand 4	H	833	840	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKM