Analysis of interatomic Contacts of Structural Units in PDB entry:
5OKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OKP entry

There is 1 chain in PDB entry 5OKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 419VAL 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5OKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
442 447Right-handed alpha
Helix 2
AA2
A
477 494Right-handed alpha
Helix 3
AA3
A
516 520Right-handed 310
Helix 4
AA4
A
568 583Right-handed alpha
Helix 5
AA5
A
594 598Right-handed 310
Helix 6
AA6
A
615 625Right-handed alpha
Helix 7
AA7
A
628 633Right-handed alpha
Helix 8
AA8
A
635 643Right-handed alpha
Helix 9
AA9
A
801 803Right-handed 310
Helix 10
AB1
A
812 817Right-handed alpha
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There are 4 sheets in PDB entry 5OKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
702 709anti-parallel
Strand 3
A
721 728anti-parallel
Strand 4
A
423 432anti-parallel
Strand 5
A
466 472parallel
Strand 6
A
508 514anti-parallel
Strand 7
A
498 505anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 531first strand
Strand 2
A
542 550anti-parallel
Strand 3
A
553 561anti-parallel
Strand 4
A
601 607parallel
Strand 5
A
690 696anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
785 787first strand
Strand 2
A
793 799anti-parallel
Strand 3
A
747 758anti-parallel
Strand 4
A
861 873anti-parallel
Strand 5
A
850 858anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 779first strand
Strand 2
A
765 770anti-parallel
Strand 3
A
820 827anti-parallel
Strand 4
A
833 840anti-parallel
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