Analysis of interatomic Contacts of Structural Units in PDB entry:
5OL2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OL2 entry

There are 5 chains in PDB entry 5OL2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 331
B	MET 6	ILE 265
C	MET 1	LYS 378
D	MET 1	GLY 331
E	MET 6	LYS 22

There are 79 helices in PDB entry 5OL2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	34	Right-handed alpha
Helix 2	AA2	A	48	56	Right-handed alpha
Helix 3	AA3	A	73	89	Right-handed alpha
Helix 4	AA4	A	100	113	Right-handed alpha
Helix 5	AA5	A	185	189	Right-handed 310
Helix 6	AA6	A	217	220	Right-handed 310
Helix 7	AA7	A	222	224	Right-handed 310
Helix 8	AA8	A	225	236	Right-handed alpha
Helix 9	AA9	A	242	248	Right-handed alpha
Helix 10	AB1	A	252	256	Right-handed 310
Helix 11	AB2	A	277	285	Right-handed alpha
Helix 12	AB3	A	300	305	Right-handed 310
Helix 13	AB4	A	312	331	Right-handed alpha
Helix 14	AB5	B	40	57	Right-handed alpha
Helix 15	AB6	B	68	70	Right-handed 310
Helix 16	AB7	B	71	82	Right-handed alpha
Helix 17	AB8	B	91	95	Right-handed 310
Helix 18	AB9	B	98	111	Right-handed alpha
Helix 19	AC1	B	131	140	Right-handed alpha
Helix 20	AC2	B	194	202	Right-handed alpha
Helix 21	AC3	B	209	213	Right-handed 310
Helix 22	AC4	B	216	220	Right-handed 310
Helix 23	AC5	B	221	225	Right-handed 310
Helix 24	AC6	B	248	261	Right-handed alpha
Helix 25	AC7	C	5	23	Right-handed alpha
Helix 26	AC8	C	26	34	Right-handed alpha
Helix 27	AC9	C	37	47	Right-handed alpha
Helix 28	AD1	C	55	59	Right-handed 310
Helix 29	AD2	C	64	77	Right-handed alpha
Helix 30	AD3	C	79	92	Right-handed alpha
Helix 31	AD4	C	93	101	Right-handed alpha
Helix 32	AD5	C	102	109	Right-handed alpha
Helix 33	AD6	C	109	115	Right-handed alpha
Helix 34	AD7	C	172	176	Right-handed 310
Helix 35	AD8	C	229	267	Right-handed alpha
Helix 36	AD9	C	277	307	Right-handed alpha
Helix 37	AE1	C	311	338	Right-handed alpha
Helix 38	AE2	C	338	343	Right-handed alpha
Helix 39	AE3	C	347	358	Right-handed alpha
Helix 40	AE4	C	364	378	Right-handed alpha
Helix 41	AE5	D	16	33	Right-handed alpha
Helix 42	AE6	D	48	56	Right-handed alpha
Helix 43	AE7	D	73	89	Right-handed alpha
Helix 44	AE8	D	100	113	Right-handed alpha
Helix 45	AE9	D	217	220	Right-handed 310
Helix 46	AF1	D	222	224	Right-handed 310
Helix 47	AF2	D	225	236	Right-handed alpha
Helix 48	AF3	D	242	248	Right-handed alpha
Helix 49	AF4	D	252	256	Right-handed 310
Helix 50	AF5	D	277	285	Right-handed alpha
Helix 51	AF6	D	312	331	Right-handed alpha
Helix 52	AF7	E	18	21	Right-handed 310
Helix 53	AF8	E	40	57	Right-handed alpha
Helix 54	AF9	E	70	82	Right-handed alpha
Helix 55	AG1	E	91	95	Right-handed 310
Helix 56	AG2	E	98	111	Right-handed alpha
Helix 57	AG3	E	131	140	Right-handed alpha
Helix 58	AG4	E	183	186	Right-handed 310
Helix 59	AG5	E	192	202	Right-handed alpha
Helix 60	AG6	E	209	213	Right-handed 310
Helix 61	AG7	E	216	220	Right-handed 310
Helix 62	AG8	E	221	225	Right-handed 310
Helix 63	AG9	E	248	261	Right-handed alpha
Helix 64	AH1	F	5	23	Right-handed alpha
Helix 65	AH2	F	26	34	Right-handed alpha
Helix 66	AH3	F	37	47	Right-handed alpha
Helix 67	AH4	F	55	59	Right-handed 310
Helix 68	AH5	F	64	77	Right-handed alpha
Helix 69	AH6	F	79	93	Right-handed alpha
Helix 70	AH7	F	93	101	Right-handed alpha
Helix 71	AH8	F	102	109	Right-handed alpha
Helix 72	AH9	F	109	115	Right-handed alpha
Helix 73	AI1	F	172	178	Right-handed 310
Helix 74	AI2	F	229	267	Right-handed alpha
Helix 75	AI3	F	277	307	Right-handed alpha
Helix 76	AI4	F	311	338	Right-handed alpha
Helix 77	AI5	F	338	343	Right-handed alpha
Helix 78	AI6	F	347	358	Right-handed alpha
Helix 79	AI7	F	364	378	Right-handed alpha

There are 17 sheets in PDB entry 5OL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	155	159	parallel
Strand 3	A	92	96	parallel
Strand 4	A	4	7	parallel
Strand 5	A	37	43	parallel
Strand 6	A	60	65	parallel
Strand 7	A	176	177	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	143	149	anti-parallel
Strand 4	B	227	234	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	B	168	174	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	144	154	anti-parallel
Strand 5	B	177	181	parallel
Strand 6	B	117	121	parallel
Strand 7	B	7	11	parallel
Strand 8	B	60	66	parallel
Strand 9	B	85	89	parallel
Strand 10	B	206	208	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	211	215	parallel
Strand 3	A	268	272	parallel
Strand 4	A	290	294	parallel
Strand 5	A	307	310	parallel
Strand 6	B	242	244	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	37	39	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	123	first strand
Strand 2	C	164	170	parallel
Strand 3	C	180	186	anti-parallel
Strand 4	C	223	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	146	157	anti-parallel
Strand 3	C	208	219	anti-parallel
Strand 4	C	192	194	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	272	273	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	155	159	parallel
Strand 3	D	92	96	parallel
Strand 4	D	4	7	parallel
Strand 5	D	37	43	parallel
Strand 6	D	60	65	parallel
Strand 7	D	176	177	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	14	15	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	125	first strand
Strand 2	D	132	138	anti-parallel
Strand 3	D	143	148	anti-parallel
Strand 4	E	228	234	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	197	first strand
Strand 2	E	168	174	anti-parallel
Strand 3	E	157	163	anti-parallel
Strand 4	E	144	154	anti-parallel
Strand 5	E	177	181	parallel
Strand 6	E	117	121	parallel
Strand 7	E	7	11	parallel
Strand 8	E	60	66	parallel
Strand 9	E	85	89	parallel
Strand 10	E	206	208	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	211	215	parallel
Strand 3	D	268	272	parallel
Strand 4	D	290	294	parallel
Strand 5	D	307	310	parallel
Strand 6	E	242	244	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	37	39	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	123	first strand
Strand 2	F	164	170	parallel
Strand 3	F	180	186	anti-parallel
Strand 4	F	223	224	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	146	157	anti-parallel
Strand 3	F	208	219	anti-parallel
Strand 4	F	192	194	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	272	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OL2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OL2