Analysis of interatomic Contacts of Structural Units in PDB entry:
5OL8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OL8 entry

There are 4 chains in PDB entry 5OL8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 153	ASP 357
B	LYS 153	ASP 357
C	LYS 153	ASP 357
D	LYS 153	ASP 357

There are 35 helices in PDB entry 5OL8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	160	166	Right-handed alpha
Helix 2	AA2	A	208	221	Right-handed alpha
Helix 3	AA3	A	243	262	Right-handed alpha
Helix 4	AA4	A	264	269	Right-handed alpha
Helix 5	AA5	A	278	285	Right-handed alpha
Helix 6	AA6	A	296	306	Right-handed alpha
Helix 7	AA7	A	318	332	Right-handed alpha
Helix 8	AA8	A	337	355	Right-handed alpha
Helix 9	AA9	B	160	166	Right-handed alpha
Helix 10	AB1	B	208	221	Right-handed alpha
Helix 11	AB2	B	240	242	Right-handed 310
Helix 12	AB3	B	243	261	Right-handed alpha
Helix 13	AB4	B	264	269	Right-handed alpha
Helix 14	AB5	B	278	285	Right-handed alpha
Helix 15	AB6	B	296	305	Right-handed alpha
Helix 16	AB7	B	318	333	Right-handed alpha
Helix 17	AB8	B	337	355	Right-handed alpha
Helix 18	AB9	C	160	166	Right-handed alpha
Helix 19	AC1	C	208	221	Right-handed alpha
Helix 20	AC2	C	240	242	Right-handed 310
Helix 21	AC3	C	243	262	Right-handed alpha
Helix 22	AC4	C	264	269	Right-handed alpha
Helix 23	AC5	C	278	285	Right-handed alpha
Helix 24	AC6	C	296	306	Right-handed alpha
Helix 25	AC7	C	318	332	Right-handed alpha
Helix 26	AC8	C	337	355	Right-handed alpha
Helix 27	AC9	D	160	166	Right-handed alpha
Helix 28	AD1	D	208	221	Right-handed alpha
Helix 29	AD2	D	240	242	Right-handed 310
Helix 30	AD3	D	243	262	Right-handed alpha
Helix 31	AD4	D	264	269	Right-handed alpha
Helix 32	AD5	D	278	285	Right-handed alpha
Helix 33	AD6	D	296	306	Right-handed alpha
Helix 34	AD7	D	318	332	Right-handed alpha
Helix 35	AD8	D	337	355	Right-handed alpha

There are 8 sheets in PDB entry 5OL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	273	277	anti-parallel
Strand 3	A	228	233	parallel
Strand 4	A	169	175	parallel
Strand 5	A	179	186	anti-parallel
Strand 6	A	191	198	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	292	293	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	228	233	parallel
Strand 4	B	169	175	parallel
Strand 5	B	180	186	anti-parallel
Strand 6	B	191	196	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	292	293	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	273	277	anti-parallel
Strand 3	C	228	233	parallel
Strand 4	C	169	175	parallel
Strand 5	C	180	186	anti-parallel
Strand 6	C	191	196	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	292	293	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	273	277	anti-parallel
Strand 3	D	228	233	parallel
Strand 4	D	169	175	parallel
Strand 5	D	180	186	anti-parallel
Strand 6	D	191	196	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	292	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OL8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OL8