Analysis of interatomic Contacts of Structural Units in PDB entry:
5OLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OLS entry

There is 1 chain in PDB entry 5OLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24PHE 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5OLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
205 210Right-handed 310
Helix 3
AA3
A
222 226Right-handed 310
Helix 4
AA4
A
395 399Right-handed 310
Helix 5
AA5
A
404 408Right-handed 310
Helix 6
AA6
A
412 418Right-handed 310
Helix 7
AA7
A
435 442Right-handed alpha
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There are 4 sheets in PDB entry 5OLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
59 62parallel
Strand 3
A
100 104parallel
Strand 4
A
136 139parallel
Strand 5
A
169 171parallel
Strand 6
A
192 194parallel
Strand 7
A
235 237parallel
Strand 8
A
259 261parallel
Strand 9
A
306 309parallel
Strand 10
A
330 333parallel
Strand 11
A
366 368parallel
Strand 12
A
391 393parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
112 115parallel
Strand 3
A
142 144parallel
Strand 4
A
174 178parallel
Strand 5
A
197 201parallel
Strand 6
A
240 244parallel
Strand 7
A
264 266parallel
Strand 8
A
312 314parallel
Strand 9
A
336 338parallel
Strand 10
A
371 373parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 90first strand
Strand 2
A
125 131parallel
Strand 3
A
157 161parallel
Strand 4
A
181 185parallel
Strand 5
A
217 219parallel
Strand 6
A
249 250parallel
Strand 7
A
282 285parallel
Strand 8
A
319 322parallel
Strand 9
A
342 345parallel
Strand 10
A
380 383parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
359 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il