Analysis of interatomic Contacts of Structural Units in PDB entry:
5OLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OLY entry

There are 6 chains in PDB entry 5OLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 23
A
 LYS 25VAL 215
A
 LEU 217GLN 220
G
 MET 1ALA 23
G
 LYS 25VAL 215
G
 LEU 217LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5OLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 31Right-handed alpha
Helix 2
AA2
A
37 42Right-handed alpha
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
65 84Right-handed alpha
Helix 5
AA5
A
85 87Right-handed 310
Helix 6
AA6
A
88 92Right-handed 310
Helix 7
AA7
A
95 106Right-handed alpha
Helix 8
AA8
A
118 126Right-handed alpha
Helix 9
AA9
A
128 132Right-handed 310
Helix 10
AB1
A
148 158Right-handed alpha
Helix 11
AB2
A
161 163Right-handed 310
Helix 12
AB3
A
171 182Right-handed alpha
Helix 13
AB4
A
190 195Right-handed alpha
Helix 14
AB5
A
203 207Right-handed 310
Helix 15
AB6
A
208 218Right-handed alpha
Helix 16
AB7
G
15 31Right-handed alpha
Helix 17
AB8
G
37 42Right-handed alpha
Helix 18
AB9
G
48 60Right-handed alpha
Helix 19
AC1
G
65 84Right-handed alpha
Helix 20
AC2
G
88 92Right-handed 310
Helix 21
AC3
G
95 106Right-handed alpha
Helix 22
AC4
G
118 126Right-handed alpha
Helix 23
AC5
G
128 132Right-handed 310
Helix 24
AC6
G
148 158Right-handed alpha
Helix 25
AC7
G
161 163Right-handed 310
Helix 26
AC8
G
171 182Right-handed alpha
Helix 27
AC9
G
190 195Right-handed alpha
Helix 28
AD1
G
203 207Right-handed 310
Helix 29
AD2
G
208 221Right-handed alpha
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There are 2 sheets in PDB entry 5OLY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
109 112parallel
Strand 3
A
4 7parallel
Strand 4
A
165 169parallel
Strand 5
A
184 188parallel
Strand 6
A
199 201parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
134 135first strand
Strand 2
G
109 112parallel
Strand 3
G
4 7parallel
Strand 4
G
165 169parallel
Strand 5
G
184 188parallel
Strand 6
G
199 201parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il