Analysis of interatomic Contacts of Structural Units in PDB entry:
5OM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OM6 entry

There are 4 chains in PDB entry 5OM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 22GLN 360
B
 ILE 361GLN 399
C
 LEU 26GLN 360
D
 ILE 361GLN 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5OM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 45Right-handed alpha
Helix 2
AA2
A
53 66Right-handed alpha
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
88 101Right-handed alpha
Helix 5
AA5
A
127 139Right-handed alpha
Helix 6
AA6
A
149 165Right-handed alpha
Helix 7
AA7
A
199 203Right-handed 310
Helix 8
AA8
A
246 248Right-handed 310
Helix 9
AA9
A
260 268Right-handed alpha
Helix 10
AB1
A
269 280Right-handed alpha
Helix 11
AB2
A
301 308Right-handed alpha
Helix 12
AB3
A
311 315Right-handed 310
Helix 13
AB4
A
320 325Right-handed alpha
Helix 14
AB5
C
27 45Right-handed alpha
Helix 15
AB6
C
53 66Right-handed alpha
Helix 16
AB7
C
69 80Right-handed alpha
Helix 17
AB8
C
88 103Right-handed alpha
Helix 18
AB9
C
127 139Right-handed alpha
Helix 19
AC1
C
149 165Right-handed alpha
Helix 20
AC2
C
199 203Right-handed 310
Helix 21
AC3
C
260 267Right-handed alpha
Helix 22
AC4
C
269 280Right-handed alpha
Helix 23
AC5
C
301 308Right-handed alpha
Helix 24
AC6
C
311 315Right-handed 310
Helix 25
AC7
C
320 325Right-handed alpha
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There are 8 sheets in PDB entry 5OM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
376 381anti-parallel
Strand 4
A
250 256anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
215 233anti-parallel
Strand 7
A
204 209anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
376 381anti-parallel
Strand 4
A
250 256anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
215 233anti-parallel
Strand 7
A
281 291anti-parallel
Strand 8
B
369 371parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
110 121anti-parallel
Strand 3
A
141 145parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
110 121anti-parallel
Strand 3
A
180 193anti-parallel
Strand 4
A
346 358anti-parallel
Strand 5
A
333 343anti-parallel
Strand 6
A
293 300anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
D
387 394anti-parallel
Strand 3
D
376 382anti-parallel
Strand 4
C
250 256anti-parallel
Strand 5
C
238 242anti-parallel
Strand 6
C
215 233anti-parallel
Strand 7
C
204 209anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
D
387 394anti-parallel
Strand 3
D
376 382anti-parallel
Strand 4
C
250 256anti-parallel
Strand 5
C
238 242anti-parallel
Strand 6
C
215 233anti-parallel
Strand 7
C
281 291anti-parallel
Strand 8
D
369 371parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
110 121anti-parallel
Strand 3
C
142 145parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
110 121anti-parallel
Strand 3
C
180 193anti-parallel
Strand 4
C
346 358anti-parallel
Strand 5
C
333 342anti-parallel
Strand 6
C
293 300anti-parallel
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