Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OMA entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5OMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 234
B
 HIS 0GLY 234
B
 LEU 236ARG 238
C
 GLU 2THR 231
D
 GLU 2THR 231
H
 UNK 1UNK 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5OMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 70Right-handed alpha
Helix 4
AA4
A
79 105Right-handed alpha
Helix 5
AA5
A
113 135Right-handed alpha
Helix 6
AA6
A
138 162Right-handed alpha
Helix 7
AA7
A
166 183Right-handed alpha
Helix 8
AA8
A
186 204Right-handed alpha
Helix 9
AA9
A
205 208Right-handed 310
Helix 10
AB1
A
209 231Right-handed alpha
Helix 11
AB2
B
2 17Right-handed alpha
Helix 12
AB3
B
18 31Right-handed alpha
Helix 13
AB4
B
37 70Right-handed alpha
Helix 14
AB5
B
79 107Right-handed alpha
Helix 15
AB6
B
113 135Right-handed alpha
Helix 16
AB7
B
138 162Right-handed alpha
Helix 17
AB8
B
166 183Right-handed alpha
Helix 18
AB9
B
186 204Right-handed alpha
Helix 19
AC1
B
205 208Right-handed 310
Helix 20
AC2
B
209 233Right-handed alpha
Helix 21
AC3
C
3 17Right-handed alpha
Helix 22
AC4
C
18 31Right-handed alpha
Helix 23
AC5
C
37 71Right-handed alpha
Helix 24
AC6
C
79 103Right-handed alpha
Helix 25
AC7
C
113 135Right-handed alpha
Helix 26
AC8
C
138 160Right-handed alpha
Helix 27
AC9
C
166 182Right-handed alpha
Helix 28
AD1
C
186 204Right-handed alpha
Helix 29
AD2
C
205 208Right-handed 310
Helix 30
AD3
C
209 231Right-handed alpha
Helix 31
AD4
D
3 17Right-handed alpha
Helix 32
AD5
D
18 31Right-handed alpha
Helix 33
AD6
D
37 70Right-handed alpha
Helix 34
AD7
D
79 105Right-handed alpha
Helix 35
AD8
D
113 135Right-handed alpha
Helix 36
AD9
D
138 162Right-handed alpha
Helix 37
AE1
D
166 183Right-handed alpha
Helix 38
AE2
D
186 204Right-handed alpha
Helix 39
AE3
D
205 208Right-handed 310
Helix 40
AE4
D
209 231Right-handed alpha
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There are no sheets in PDB entry 5OMA
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