Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OMC entry

There are 4 chains in PDB entry 5OMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4LEU 132
B
 GLN 5THR 131
C
 ASP 10HIS 106
D
 ASP 10HIS 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5OMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
17 23Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
120 127Right-handed alpha
Helix 5
AA5
B
9 17Right-handed alpha
Helix 6
AA6
B
17 23Right-handed alpha
Helix 7
AA7
B
43 45Right-handed 310
Helix 8
AA8
B
62 73Right-handed alpha
Helix 9
AA9
B
91 94Right-handed 310
Helix 10
AB1
B
120 127Right-handed alpha
Helix 11
AB2
C
11 16Right-handed alpha
Helix 12
AB3
C
35 103Right-handed alpha
Helix 13
AB4
D
11 16Right-handed alpha
Helix 14
AB5
D
35 106Right-handed alpha
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There are 2 sheets in PDB entry 5OMC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
55 61parallel
Strand 3
A
95 107parallel
Strand 4
A
79 90anti-parallel
Strand 5
A
28 33anti-parallel
Strand 6
A
47 51anti-parallel
Strand 7
A
55 61anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
55 61parallel
Strand 3
B
96 107parallel
Strand 4
B
79 89anti-parallel
Strand 5
B
28 33anti-parallel
Strand 6
B
47 51anti-parallel
Strand 7
B
55 61anti-parallel
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